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WARNING: 10059 : WARNING: Plugin 'LoF' went wrong: Undefined subroutine &LoF::reverse_complement called at /gpfs/hpc/home/public/jclabadmin/software/anaconda3/envs/vep110/share/ensembl-vep-110.1-0/de_novo_donor.pl line 68, <__ANONIO__> line 5019.

Status: Open.

#117 In konradjk/loftee;

· joanzz opened on Oct 30, 2025

Persistent samtools faidx error with LOFTEE grch38 branch in VEP v114.2

Status: Open.

#116 In konradjk/loftee;

· kkim-by opened on Aug 21, 2025

Issue using Loftee plugin in VEP with singularity

Status: Open.

#115 In konradjk/loftee;

· TheBil99 opened on Jul 14, 2025

MSG: Slice start cannot be greater than slice end

Status: Open.

#114 In konradjk/loftee;

· sgyproject opened on Jul 2, 2025

unable to run loftee for GRCh38. Is it optimised for running on hg38 assembly ?

Status: Open.

#113 In konradjk/loftee;

· suzy-22 opened on May 15, 2025

Missing documentation for the "LoF_info" "PERCENTILE"?

Status: Open.

#112 In konradjk/loftee;

· MikeACG opened on Dec 27, 2024

gtex.db

Status: Open.

#110 In konradjk/loftee;

· BenjaminDEMAILLE opened on Oct 1, 2024

GRCh38 branch does not work with GRCh37 data

Status: Open.

#109 In konradjk/loftee;

· yunkaig opened on Jun 21, 2024

LOFTEE for CHM13

Status: Open.

#108 In konradjk/loftee;

· LuyaoRen opened on Jun 14, 2024

WARNING: Plugin 'LoF' went wrong: Undefined subroutine &LoF::reverse_complement called at $CONDA_PREFIX/share/ensembl-vep-111.0-0/LoF.pm line 491

Status: Open.

#106 In konradjk/loftee;

· madhushanka opened on May 29, 2024

Loss of END_TRUNC in GRCh38 vs GRCh37 due to change in GERP cutoff from +180 to -58

Status: Open.

#105 In konradjk/loftee;

· daniel-wells opened on Apr 25, 2024

doesn't annotate certain LoF suspected variants?

Status: Open.

#104 In konradjk/loftee;

· dtomi0223 opened on Apr 12, 2024