bp_utils

A collection of scripts/source files that may be useful to others

Name		Name	Last commit message	Last commit date
Latest commit History 299 Commits
af.template.dir		af.template.dir
countSARS2Leaders		countSARS2Leaders
data		data
notebooks		notebooks
saintDocker		saintDocker
APMS_Bait_Convergence.R		APMS_Bait_Convergence.R
APMS_Utils.R		APMS_Utils.R
APMS_scores.R		APMS_scores.R
ClusteredHeatmapWithLineChartExample.R		ClusteredHeatmapWithLineChartExample.R
CompleteCaseNormalize.R		CompleteCaseNormalize.R
CompositeLocationsAPEX.R		CompositeLocationsAPEX.R
ConvergenceInBaitPreySets.R		ConvergenceInBaitPreySets.R
CorrelationScatterPlots.R		CorrelationScatterPlots.R
EvidenceFile2MSstatsInput.R		EvidenceFile2MSstatsInput.R
FixTIMSEvidence.R		FixTIMSEvidence.R
FragPipe2MSstats.usage.R		FragPipe2MSstats.usage.R
HumanToMo_nkey_usePHSite.R		HumanToMo_nkey_usePHSite.R
IntroducingDataTableManipulations.Rmd		IntroducingDataTableManipulations.Rmd
IntroducingDataTableManipulations.html		IntroducingDataTableManipulations.html
Isoforms.R		Isoforms.R
KinaseActivityScores.R		KinaseActivityScores.R
LICENSE		LICENSE
LinearModels.R		LinearModels.R
Localization_CellMap.R		Localization_CellMap.R
LocatePeptidePtmInProteins.R		LocatePeptidePtmInProteins.R
MS_ModelFitting_TimeSeries.R		MS_ModelFitting_TimeSeries.R
MSstats_Helper_Functions.R		MSstats_Helper_Functions.R
MSstats_V4_Functions.R		MSstats_V4_Functions.R
ManageScriptData.R		ManageScriptData.R
NMF_Helpers.R		NMF_Helpers.R
NetworkModularization.R		NetworkModularization.R
NetworkPropagation.R		NetworkPropagation.R
NetworkPropagation_Build_S_matrix.diffusion.py		NetworkPropagation_Build_S_matrix.diffusion.py
NetworkPropagation_Build_S_matrix.py		NetworkPropagation_Build_S_matrix.py
Normalization.R		Normalization.R
OrphanBitsOfCode.R		OrphanBitsOfCode.R
OrthologousPhosphoSiteConverter.R		OrthologousPhosphoSiteConverter.R
OrthologsInBioMart.Rmd		OrthologsInBioMart.Rmd
PH_Motif_Analysis.R		PH_Motif_Analysis.R
PPINetworkModularized.R		PPINetworkModularized.R
ProteinCoverageInteractive.Rmd		ProteinCoverageInteractive.Rmd
README.md		README.md
SEC_MS_utils.R		SEC_MS_utils.R
STRING_db_utils.R		STRING_db_utils.R
SaintExpressR.R		SaintExpressR.R
StringSMatrix.HeatDiffuse.py		StringSMatrix.HeatDiffuse.py
UniprotIDMapping.R		UniprotIDMapping.R
enrichmentTestFunctions.R		enrichmentTestFunctions.R
spectronautFile2ArtMS.R		spectronautFile2ArtMS.R
usage.spectronaut2ArtMS.R		usage.spectronaut2ArtMS.R

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