v2.1.2e

Allow multiple sample/psam/fam inputs.

v2.1.2d

Use tee to output to both a log file and stdout. Before this change, the log would only be available if the runs succeeded (makes debugging difficult!).

v2.1.2c

The previous GEM release was actually 2.1.1. Now actually updated to Gem 2.1.2.

v2.1.2b

Bugfix: some optional arguments were broken because I forgot spaces.

v2.1.2a

• WDL now uses GEM v2.1.2
• Added all GEM v2.1.2 options
• Added customizable maxRetries input
• Simplified WDL
• Rewrote Dockerfile to simply download the pre-compiled GEM binary from the GEM GitHub releases

v1.5.3a

• WDL now uses GEM v1.5.3
• Added all GEM v1.5.3 options to the WDL
• GEM's stdout now provided as a WDL output File
• Simplified WDL
• Rewrote Dockerfile to fix broken MKL download link

v1.5.2.a

Associated with GEM v1.5.2

Fixed output when there is no exposure

v1.5a

v1.5a

v1.4.5a

v1.4.5a

v1.4.1a

Associated with GEM v1.4.1.