ConeRodModel 4.7

Created on 2026-03-02 by Luca Della Santina

• Plotted on last panel Vm of illuminated vs non-illuminated rods
• Added context menu to switch back to plotting Vm of all vs coupled rods
• Reworded axis of last plot to show identity of rods

ConeRodModel 4.6

Created on 2025-04-09 by Luca Della Santina:

• myode() changed currents update code to allow dt values > 1e-5
• myode() fixed bug in dVgap_dt calculation, was integrated by dt
• updated initial calcium concentration values in cones and rods
• default sampling dt = 1 ms

ConeRodModel 4.5

Created on 2025-03-04 by Luca Della Santina:

• Distributing Igap across connected C->C, R->R, R->C
• Distributing Igap to non-illuminated rods via R->C->R and C->C->R
• Consolidated connectivity graph plot into a single method plotGraph()

ConeRodModel 4.4

Created on 2025-03-02 by Luca Della Santina:

• New checkbox option to specify custom steps in a batch series
• Independent calculation of dVdt for inner segment from gap junctions
• Default values of gap-junction conductances based on empiric data

ConeRodModel 4.3

Created on 2025-02-24 by Luca Della Santina

• New button to preview the current connectivity graph in full page
• Upon startup preview the default connectivity graphs
• Ensure each node of the graph is shown with the corresponding cell num
• Updated info page

ConeRodModel 4.2

Created on 2025-02-23 by Luca Della Santina

• New batch mode plots aggregate properties of reference cone across
• RefCell allows any cell can be selected to be the reference (rod/cone)

ConeRodModel 4.1

Created on 2025-02-21 by Luca Della Santina

• Exposed parameters specific for Rods and Cones in separate UI tables
• Parameters from each table can be used for batch processing
• Fixed rounding error of number of time steps calculation
• Fixed when loading existing model, hidden parameters are shown in table

ConeRodModel 4.0

Created on 2025-02-20 by Luca Della Santina:

• Full light response model for rods and cones
• Added custom flash trigger delay via Tdelay property
• Cones can be illuminated using ConesIllNum property
• Fixed graph plotting error when setting RCjc = 0
• Automatic y-axis scaling in all plots
• Data saved as CSV instead of excel to allow large tables
• Progress bar tracks progress during solve model step
• Plotting in pink cones illuminated
• Plotting in green reference cone
• Plotting arrow in photocurrents indicates flash trigger time
• Plotting rearranged and added voltage of illuminated cones
• ConesIllRandom allows randomization of illuminated cones identity

ConeRodModel 3.6

Created on 2025-01-09 by Luca Della Santina:

• Ported to MATLAB 2024b
• Added new parameter LRmodelFull to switch between SPR and full LR
• Added calcIrod and calcIcone methods to abstract SPR from full LR model
• Refactored code to ensure all params are available when loading model saved with previous versions of the app from initialize model to load button callback

ConeRodModel 3.5

Created on 2024-09-10 by Luca Della Santina:

• Custom simulation end-time via Tmax parameter
• Custom simulation sampling time via Tdelta parameter
• Custom rod and cone noise level via NoiseRodAmp/NoiseConeAmp
• Fixed custom resting potential for cones and rod
• Fixed plotting voltage traces when resting potential is not zero