Leiden University Medical Center: Pharmacogenomics tools and methods

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1. gene-viz gene-viz Public

   Interactive visualization of gene structure

   Python 1

2. pgx-pipe pgx-pipe Public

   Pharmacogenomics pipeline of long amplicon sequences

   Python 1

3. variant-tools variant-tools Public

   Tools for working with variants. Includes simple variant calling and comparison.

   Python

4. locus-processing locus-processing Public

   Methods and tools for processing locus definition files used by the PGx pipeline.

   Python

5. CCS-Amplicon CCS-Amplicon Public

   Create polished, phased allele sequences from PacBio amplicon data.

   Python

6. pipe-helper pipe-helper Public

   Utility module to provide consistent handling of barcodes and loci by the PGx pipeline stages.

   Python