-
Notifications
You must be signed in to change notification settings - Fork 9
Examples
magosil86 edited this page Sep 10, 2015
·
4 revisions
For each pipeline available in witsGWAS, an example dataset and corresponding results have been made available at provide_link
| Pipeline | Dataset |
|---|---|
| Affymetrix QC | affyqc |
| affyqc_no-pheno-info | |
| PLINK QC | plinkqc |
| plinkqc_no-sex-info | |
| Association testing | assoc_testing |
| assoc_testing_no-sex-info |
Home | About | Setup guide | Running pipelines | Extending pipelines | FAQ | © 2015 witsGWAS
About witsGWAS
Getting started
Dockerized pipeline
Running pipelines
- How witsGWAS pipelines work
- Affymetrix QC pipeline
- PLINK QC pipeline
- Association testing pipeline
- Timing of pipeline runs
- witsGWAS cheat sheet
Extending pipelines
Advanced GWAS topics
Getting help