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Update bed-reader dependency#1332

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jonbrenas merged 1 commit into
malariagen:masterfrom
jwgarber:update-bed-reader
Jun 22, 2026
Merged

Update bed-reader dependency#1332
jonbrenas merged 1 commit into
malariagen:masterfrom
jwgarber:update-bed-reader

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@jwgarber

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Bed-reader version 1.0.6 has an error when adding malariagen-data as a dependency with uv:

  × Failed to download and build `bed-reader==1.0.6`
  ├─▶ Failed to parse: `/home/jacob/.cache/uv/sdists-v9/pypi/bed-reader/1.0.6/PcWHBa421K-LBB-5/src/pyproject.toml`
  ╰─▶ TOML parse error at line 1, column 1
        |
      1 | [project]
        | ^^^^^^^^^
      `pyproject.toml` is using the `[project]` table, but the required `project.version` field is neither set nor present in the `project.dynamic` list

Version 1.1.0 fixes it.

@jwgarber

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@jonbrenas @tristanpwdennis Another PR for you.

@jwgarber jwgarber force-pushed the update-bed-reader branch from 5359b48 to 68c5bdd Compare June 20, 2026 20:14

@tristanpwdennis tristanpwdennis left a comment

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Tests pass locally for me. If it's ok with @jonbrenas , it's ok with me.

@jonbrenas

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Looks good to me. I am probably going to make a patch soon (I need to check a few things with @ahernank first).

@jonbrenas

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Thanks, @jwgarber. Can you regenerate poetry.lock?

Version 1.0.6 has an error when adding malariagen-data as a dependency
with uv. The new version fixes it.
@jwgarber jwgarber force-pushed the update-bed-reader branch from 68c5bdd to 1a0ddeb Compare June 22, 2026 15:58
@jwgarber

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@jonbrenas Yup done.

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Great! I'll merge it when the tests complete.

@jonbrenas jonbrenas merged commit b1baf2b into malariagen:master Jun 22, 2026
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4 participants