Automated dependency upgrades

requirements/requirements-ubuntu-latest_py3.11.txt

@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.11
 # by the following command:
 #
-#    pip-compile --output-file=requirements/requirements-ubuntu-latest_py3.11.txt pyproject.toml
+#    pip-compile --cert=None --client-cert=None --index-url=None --output-file=requirements/requirements-ubuntu-latest_py3.11.txt --pip-args=None pyproject.toml
 #
 aioitertools==0.12.0
     # via maggma
@@ -13,13 +13,13 @@ attrs==25.3.0
     #   jsonlines
     #   jsonschema
     #   referencing
-bcrypt==4.3.0
+bcrypt==5.0.0
     # via paramiko
 bibtexparser==1.4.3
     # via pymatgen
-boto3==1.40.31
+boto3==1.40.39
     # via maggma
-botocore==1.40.31
+botocore==1.40.39
     # via
     #   boto3
     #   s3transfer
@@ -33,7 +33,7 @@ charset-normalizer==3.4.3
     # via requests
 contourpy==1.3.3
     # via matplotlib
-cryptography==45.0.7
+cryptography==46.0.1
     # via paramiko
 cycler==0.12.1
     # via matplotlib
@@ -43,7 +43,7 @@ dnspython==2.8.0
     #   pymongo
 emmet-core==0.84.10rc2
     # via mp-api (pyproject.toml)
-fonttools==4.59.2
+fonttools==4.60.0
     # via matplotlib
 idna==3.10
     # via requests
@@ -131,7 +131,7 @@ pydantic==2.11.9
     #   pymatgen-io-validation
 pydantic-core==2.33.2
     # via pydantic
-pydantic-settings==2.10.1
+pydantic-settings==2.11.0
     # via
     #   emmet-core
     #   maggma
@@ -143,13 +143,13 @@ pymatgen==2025.6.14
     #   emmet-core
     #   mp-api (pyproject.toml)
     #   pymatgen-io-validation
-pymatgen-io-validation==0.1.1
+pymatgen-io-validation==0.1.2
     # via emmet-core
 pymongo==4.10.1
     # via maggma
 pynacl==1.6.0
     # via paramiko
-pyparsing==3.2.4
+pyparsing==3.2.5
     # via
     #   bibtexparser
     #   matplotlib
@@ -187,7 +187,7 @@ ruamel-yaml==0.18.15
     #   maggma
     #   monty
     #   pymatgen
-ruamel-yaml-clib==0.2.12
+ruamel-yaml-clib==0.2.14
     # via ruamel-yaml
 s3transfer==0.14.0
     # via boto3

requirements/requirements-ubuntu-latest_py3.11_extras.txt

@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.11
 # by the following command:
 #
-#    pip-compile --all-extras --output-file=requirements/requirements-ubuntu-latest_py3.11_extras.txt pyproject.toml
+#    pip-compile --all-extras --cert=None --client-cert=None --index-url=None --output-file=requirements/requirements-ubuntu-latest_py3.11_extras.txt --pip-args=None pyproject.toml
 #
 aioitertools==0.12.0
     # via maggma
@@ -23,17 +23,17 @@ attrs==25.3.0
     #   referencing
 babel==2.17.0
     # via sphinx
-bcrypt==4.3.0
+bcrypt==5.0.0
     # via paramiko
 bibtexparser==1.4.3
     # via pymatgen
 boltons==25.0.0
     # via mpcontribs-client
-boto3==1.40.31
+boto3==1.40.39
     # via
     #   maggma
     #   mp-api (pyproject.toml)
-botocore==1.40.31
+botocore==1.40.39
     # via
     #   boto3
     #   s3transfer
@@ -55,9 +55,9 @@ charset-normalizer==3.4.3
     # via requests
 contourpy==1.3.3
     # via matplotlib
-coverage[toml]==7.10.6
+coverage[toml]==7.10.7
     # via pytest-cov
-cryptography==45.0.7
+cryptography==46.0.1
     # via paramiko
 custodian==2025.8.13
     # via mp-api (pyproject.toml)
@@ -94,7 +94,7 @@ flexcache==0.3
     # via pint
 flexparser==0.4
     # via pint
-fonttools==4.59.2
+fonttools==4.60.0
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
@@ -155,7 +155,7 @@ jsonschema-specifications==2025.9.1
     # via jsonschema
 kiwisolver==1.4.9
     # via matplotlib
-lark==1.2.2
+lark==1.3.0
     # via rfc3987-syntax
 latexcodec==3.0.1
     # via pybtex
@@ -217,7 +217,7 @@ msgpack==1.1.1
     #   maggma
     #   mmtf-python
     #   mp-api (pyproject.toml)
-mypy==1.18.1
+mypy==1.18.2
     # via mp-api (pyproject.toml)
 mypy-extensions==1.1.0
     # via
@@ -325,7 +325,7 @@ pre-commit==4.3.0
     # via mp-api (pyproject.toml)
 prompt-toolkit==3.0.52
     # via ipython
-psutil==7.0.0
+psutil==7.1.0
     # via custodian
 ptyprocess==0.7.0
     # via pexpect
@@ -353,7 +353,7 @@ pydantic==2.11.9
     #   pymatgen-io-validation
 pydantic-core==2.33.2
     # via pydantic
-pydantic-settings==2.10.1
+pydantic-settings==2.11.0
     # via
     #   emmet-core
     #   maggma
@@ -388,7 +388,7 @@ pymatgen-analysis-defects==2025.1.18
     # via emmet-core
 pymatgen-analysis-diffusion==2024.7.15
     # via emmet-core
-pymatgen-io-validation==0.1.1
+pymatgen-io-validation==0.1.2
     # via emmet-core
 pymongo==4.10.1
     # via
@@ -397,7 +397,7 @@ pymongo==4.10.1
     #   mpcontribs-client
 pynacl==1.6.0
     # via paramiko
-pyparsing==3.2.4
+pyparsing==3.2.5
     # via
     #   bibtexparser
     #   matplotlib
@@ -413,7 +413,7 @@ pytest-asyncio==1.2.0
     # via mp-api (pyproject.toml)
 pytest-cov==7.0.0
     # via mp-api (pyproject.toml)
-pytest-mock==3.15.0
+pytest-mock==3.15.1
     # via mp-api (pyproject.toml)
 pytest-xdist==3.8.0
     # via mp-api (pyproject.toml)
@@ -481,7 +481,7 @@ ruamel-yaml==0.18.15
     #   monty
     #   pymatgen
     #   robocrys
-ruamel-yaml-clib==0.2.12
+ruamel-yaml-clib==0.2.14
     # via ruamel-yaml
 s3transfer==0.14.0
     # via boto3
@@ -508,7 +508,7 @@ semantic-version==2.10.0
     # via mpcontribs-client
 sentinels==1.1.1
     # via mongomock
-shapely==2.1.1
+shapely==2.1.2
     # via pymatgen-analysis-alloys
 simplejson==3.20.1
     # via
@@ -568,7 +568,7 @@ threadpoolctl==3.6.0
     #   scikit-learn
 tidynamics==1.1.2
     # via transport-analysis
-tifffile==2025.9.9
+tifffile==2025.9.20
     # via scikit-image
 tqdm==4.67.1
     # via
@@ -629,7 +629,7 @@ urllib3==2.5.0
     #   types-requests
 virtualenv==20.34.0
     # via pre-commit
-wcwidth==0.2.13
+wcwidth==0.2.14
     # via prompt-toolkit
 webcolors==24.11.1
     # via jsonschema

requirements/requirements-ubuntu-latest_py3.12.txt

@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.12
 # by the following command:
 #
-#    pip-compile --output-file=requirements/requirements-ubuntu-latest_py3.12.txt pyproject.toml
+#    pip-compile --cert=None --client-cert=None --index-url=None --output-file=requirements/requirements-ubuntu-latest_py3.12.txt --pip-args=None pyproject.toml
 #
 aioitertools==0.12.0
     # via maggma
@@ -13,13 +13,13 @@ attrs==25.3.0
     #   jsonlines
     #   jsonschema
     #   referencing
-bcrypt==4.3.0
+bcrypt==5.0.0
     # via paramiko
 bibtexparser==1.4.3
     # via pymatgen
-boto3==1.40.31
+boto3==1.40.39
     # via maggma
-botocore==1.40.31
+botocore==1.40.39
     # via
     #   boto3
     #   s3transfer
@@ -33,7 +33,7 @@ charset-normalizer==3.4.3
     # via requests
 contourpy==1.3.3
     # via matplotlib
-cryptography==45.0.7
+cryptography==46.0.1
     # via paramiko
 cycler==0.12.1
     # via matplotlib
@@ -43,7 +43,7 @@ dnspython==2.8.0
     #   pymongo
 emmet-core==0.84.10rc2
     # via mp-api (pyproject.toml)
-fonttools==4.59.2
+fonttools==4.60.0
     # via matplotlib
 idna==3.10
     # via requests
@@ -131,7 +131,7 @@ pydantic==2.11.9
     #   pymatgen-io-validation
 pydantic-core==2.33.2
     # via pydantic
-pydantic-settings==2.10.1
+pydantic-settings==2.11.0
     # via
     #   emmet-core
     #   maggma
@@ -143,13 +143,13 @@ pymatgen==2025.6.14
     #   emmet-core
     #   mp-api (pyproject.toml)
     #   pymatgen-io-validation
-pymatgen-io-validation==0.1.1
+pymatgen-io-validation==0.1.2
     # via emmet-core
 pymongo==4.10.1
     # via maggma
 pynacl==1.6.0
     # via paramiko
-pyparsing==3.2.4
+pyparsing==3.2.5
     # via
     #   bibtexparser
     #   matplotlib
@@ -187,7 +187,7 @@ ruamel-yaml==0.18.15
     #   maggma
     #   monty
     #   pymatgen
-ruamel-yaml-clib==0.2.12
+ruamel-yaml-clib==0.2.14
     # via ruamel-yaml
 s3transfer==0.14.0
     # via boto3