Automated dependency upgrades

requirements/requirements-ubuntu-latest_py3.11.txt

@@ -10,21 +10,21 @@ bibtexparser==1.4.3
     # via pymatgen
 blake3==1.0.8
     # via emmet-core
-boto3==1.40.67
+boto3==1.41.5
     # via mp-api (pyproject.toml)
-botocore==1.40.67
+botocore==1.41.5
     # via
     #   boto3
     #   s3transfer
-certifi==2025.10.5
+certifi==2025.11.12
     # via requests
 charset-normalizer==3.4.4
     # via requests
 contourpy==1.3.3
     # via matplotlib
 cycler==0.12.1
     # via matplotlib
-emmet-core==0.86.0
+emmet-core==0.86.1
     # via mp-api (pyproject.toml)
 fonttools==4.60.1
     # via matplotlib
@@ -51,11 +51,11 @@ mpmath==1.3.0
     # via sympy
 msgpack==1.1.2
     # via mp-api (pyproject.toml)
-narwhals==2.10.2
+narwhals==2.12.0
     # via plotly
-networkx==3.5
+networkx==3.6
     # via pymatgen
-numpy==2.3.4
+numpy==2.3.5
     # via
     #   contourpy
     #   matplotlib
@@ -79,18 +79,18 @@ pandas==2.3.3
     # via pymatgen
 pillow==12.0.0
     # via matplotlib
-plotly==6.4.0
+plotly==6.5.0
     # via pymatgen
 pybtex==0.25.1
     # via emmet-core
-pydantic==2.12.4
+pydantic==2.12.5
     # via
     #   emmet-core
     #   pydantic-settings
     #   pymatgen-io-validation
 pydantic-core==2.41.5
     # via pydantic
-pydantic-settings==2.11.0
+pydantic-settings==2.12.0
     # via
     #   emmet-core
     #   pymatgen-io-validation
@@ -125,15 +125,15 @@ ruamel-yaml==0.18.16
     # via
     #   monty
     #   pymatgen
-ruamel-yaml-clib==0.2.14
+ruamel-yaml-clib==0.2.15
     # via ruamel-yaml
-s3transfer==0.14.0
+s3transfer==0.15.0
     # via boto3
 scipy==1.16.3
     # via pymatgen
 six==1.17.0
     # via python-dateutil
-smart-open==7.4.4
+smart-open==7.5.0
     # via mp-api (pyproject.toml)
 spglib==2.6.0
     # via pymatgen
@@ -164,5 +164,5 @@ urllib3==2.5.0
     # via
     #   botocore
     #   requests
-wrapt==2.0.0
+wrapt==2.0.1
     # via smart-open

requirements/requirements-ubuntu-latest_py3.11_extras.txt

@@ -12,7 +12,7 @@ arrow==1.4.0
     # via isoduration
 ase==3.26.0
     # via pymatgen-analysis-diffusion
-asttokens==3.0.0
+asttokens==3.0.1
     # via stack-data
 attrs==25.4.0
     # via
@@ -26,27 +26,27 @@ blake3==1.0.8
     # via emmet-core
 boltons==25.0.0
     # via mpcontribs-client
-boto3==1.40.67
+boto3==1.41.5
     # via mp-api (pyproject.toml)
-botocore==1.40.67
+botocore==1.41.5
     # via
     #   boto3
     #   s3transfer
 bravado==12.0.1
     # via mpcontribs-client
 bravado-core==6.1.1
     # via bravado
-cachetools==6.2.1
+cachetools==6.2.2
     # via mpcontribs-client
-certifi==2025.10.5
+certifi==2025.11.12
     # via requests
-cfgv==3.4.0
+cfgv==3.5.0
     # via pre-commit
 charset-normalizer==3.4.4
     # via requests
 contourpy==1.3.3
     # via matplotlib
-coverage[toml]==7.11.0
+coverage[toml]==7.12.0
     # via pytest-cov
 custodian==2025.10.11
     # via mp-api (pyproject.toml)
@@ -62,9 +62,9 @@ dnspython==2.8.0
     #   pymongo
 docutils==0.21.2
     # via sphinx
-emmet-core[all]==0.86.0
+emmet-core[all]==0.86.1
     # via mp-api (pyproject.toml)
-execnet==2.1.1
+execnet==2.1.2
     # via pytest-xdist
 executing==2.2.1
     # via stack-data
@@ -181,16 +181,16 @@ mypy-extensions==1.1.0
     # via
     #   mp-api (pyproject.toml)
     #   mypy
-narwhals==2.10.2
+narwhals==2.12.0
     # via plotly
-networkx==3.5
+networkx==3.6
     # via
     #   pymatgen
     #   robocrys
     #   scikit-image
 nodeenv==1.9.1
     # via pre-commit
-numpy==1.26.4
+numpy==2.3.5
     # via
     #   ase
     #   contourpy
@@ -244,21 +244,21 @@ pillow==12.0.0
     #   imageio
     #   matplotlib
     #   scikit-image
-pint==0.25.1
+pint==0.25.2
     # via mpcontribs-client
 platformdirs==4.5.0
     # via
     #   pint
     #   virtualenv
-plotly==6.4.0
+plotly==6.5.0
     # via
     #   mpcontribs-client
     #   pymatgen
 pluggy==1.6.0
     # via
     #   pytest
     #   pytest-cov
-pre-commit==4.3.0
+pre-commit==4.5.0
     # via mp-api (pyproject.toml)
 prompt-toolkit==3.0.52
     # via ipython
@@ -280,14 +280,14 @@ pycodestyle==2.14.0
     # via
     #   flake8
     #   mp-api (pyproject.toml)
-pydantic==2.12.4
+pydantic==2.12.5
     # via
     #   emmet-core
     #   pydantic-settings
     #   pymatgen-io-validation
 pydantic-core==2.41.5
     # via pydantic
-pydantic-settings==2.11.0
+pydantic-settings==2.12.0
     # via
     #   emmet-core
     #   pymatgen-io-validation
@@ -315,28 +315,28 @@ pymatgen==2025.10.7
     #   robocrys
 pymatgen-analysis-alloys==0.0.8
     # via emmet-core
-pymatgen-analysis-defects==2025.1.18
+pymatgen-analysis-defects==2025.9.26
     # via emmet-core
-pymatgen-analysis-diffusion==2024.7.15
+pymatgen-analysis-diffusion==2025.11.15
     # via emmet-core
 pymatgen-io-validation==0.1.2
     # via emmet-core
-pymongo==4.15.3
+pymongo==4.15.4
     # via
     #   matminer
     #   mpcontribs-client
 pyparsing==3.2.5
     # via
     #   bibtexparser
     #   matplotlib
-pytest==8.4.2
+pytest==9.0.1
     # via
     #   mp-api (pyproject.toml)
     #   pytest-asyncio
     #   pytest-cov
     #   pytest-mock
     #   pytest-xdist
-pytest-asyncio==1.2.0
+pytest-asyncio==1.3.0
     # via mp-api (pyproject.toml)
 pytest-cov==7.0.0
     # via mp-api (pyproject.toml)
@@ -387,11 +387,11 @@ rfc3986-validator==0.1.1
     # via jsonschema
 rfc3987-syntax==1.1.0
     # via jsonschema
-robocrys==0.2.11
+robocrys==0.2.12
     # via emmet-core
 roman-numerals-py==3.1.0
     # via sphinx
-rpds-py==0.28.0
+rpds-py==0.29.0
     # via
     #   jsonschema
     #   referencing
@@ -400,10 +400,9 @@ ruamel-yaml==0.18.16
     #   custodian
     #   monty
     #   pymatgen
-    #   robocrys
-ruamel-yaml-clib==0.2.14
+ruamel-yaml-clib==0.2.15
     # via ruamel-yaml
-s3transfer==0.14.0
+s3transfer==0.15.0
     # via boto3
 scikit-image==0.25.2
     # via pymatgen-analysis-defects
@@ -435,7 +434,7 @@ six==1.17.0
     #   flatten-dict
     #   python-dateutil
     #   rfc3339-validator
-smart-open==7.4.4
+smart-open==7.5.0
     # via mp-api (pyproject.toml)
 snowballstemmer==3.0.1
     # via sphinx
@@ -533,5 +532,5 @@ wcwidth==0.2.14
     # via prompt-toolkit
 webcolors==25.10.0
     # via jsonschema
-wrapt==2.0.0
+wrapt==2.0.1
     # via smart-open

requirements/requirements-ubuntu-latest_py3.12.txt

@@ -10,21 +10,21 @@ bibtexparser==1.4.3
     # via pymatgen
 blake3==1.0.8
     # via emmet-core
-boto3==1.40.67
+boto3==1.41.5
     # via mp-api (pyproject.toml)
-botocore==1.40.67
+botocore==1.41.5
     # via
     #   boto3
     #   s3transfer
-certifi==2025.10.5
+certifi==2025.11.12
     # via requests
 charset-normalizer==3.4.4
     # via requests
 contourpy==1.3.3
     # via matplotlib
 cycler==0.12.1
     # via matplotlib
-emmet-core==0.86.0
+emmet-core==0.86.1
     # via mp-api (pyproject.toml)
 fonttools==4.60.1
     # via matplotlib
@@ -51,11 +51,11 @@ mpmath==1.3.0
     # via sympy
 msgpack==1.1.2
     # via mp-api (pyproject.toml)
-narwhals==2.10.2
+narwhals==2.12.0
     # via plotly
-networkx==3.5
+networkx==3.6
     # via pymatgen
-numpy==2.3.4
+numpy==2.3.5
     # via
     #   contourpy
     #   matplotlib
@@ -79,18 +79,18 @@ pandas==2.3.3
     # via pymatgen
 pillow==12.0.0
     # via matplotlib
-plotly==6.4.0
+plotly==6.5.0
     # via pymatgen
 pybtex==0.25.1
     # via emmet-core
-pydantic==2.12.4
+pydantic==2.12.5
     # via
     #   emmet-core
     #   pydantic-settings
     #   pymatgen-io-validation
 pydantic-core==2.41.5
     # via pydantic
-pydantic-settings==2.11.0
+pydantic-settings==2.12.0
     # via
     #   emmet-core
     #   pymatgen-io-validation
@@ -125,15 +125,15 @@ ruamel-yaml==0.18.16
     # via
     #   monty
     #   pymatgen
-ruamel-yaml-clib==0.2.14
+ruamel-yaml-clib==0.2.15
     # via ruamel-yaml
-s3transfer==0.14.0
+s3transfer==0.15.0
     # via boto3
 scipy==1.16.3
     # via pymatgen
 six==1.17.0
     # via python-dateutil
-smart-open==7.4.4
+smart-open==7.5.0
     # via mp-api (pyproject.toml)
 spglib==2.6.0
     # via pymatgen
@@ -163,5 +163,5 @@ urllib3==2.5.0
     # via
     #   botocore
     #   requests
-wrapt==2.0.0
+wrapt==2.0.1
     # via smart-open