Automated dependency upgrades

requirements/requirements-ubuntu-latest_py3.11.txt

@@ -17,13 +17,13 @@ bcrypt==4.3.0
     # via paramiko
 bibtexparser==1.4.3
     # via pymatgen
-boto3==1.38.31
+boto3==1.38.37
     # via maggma
-botocore==1.38.31
+botocore==1.38.37
     # via
     #   boto3
     #   s3transfer
-certifi==2025.4.26
+certifi==2025.6.15
     # via requests
 cffi==1.17.1
     # via
@@ -33,17 +33,17 @@ charset-normalizer==3.4.2
     # via requests
 contourpy==1.3.2
     # via matplotlib
-cryptography==45.0.3
+cryptography==45.0.4
     # via paramiko
 cycler==0.12.1
     # via matplotlib
 dnspython==2.7.0
     # via
     #   maggma
     #   pymongo
-emmet-core==0.84.7rc3
+emmet-core==0.84.8
     # via mp-api (pyproject.toml)
-fonttools==4.58.1
+fonttools==4.58.4
     # via matplotlib
 idna==3.10
     # via requests
@@ -77,15 +77,15 @@ monty==2025.3.3
     #   pymatgen
 mpmath==1.3.0
     # via sympy
-msgpack==1.1.0
+msgpack==1.1.1
     # via
     #   maggma
     #   mp-api (pyproject.toml)
-narwhals==1.41.0
+narwhals==1.43.0
     # via plotly
 networkx==3.5
     # via pymatgen
-numpy==2.2.6
+numpy==2.3.0
     # via
     #   contourpy
     #   maggma
@@ -120,7 +120,7 @@ pybtex==0.24.0
     # via emmet-core
 pycparser==2.22
     # via cffi
-pydantic==2.11.5
+pydantic==2.11.7
     # via
     #   emmet-core
     #   maggma
@@ -133,7 +133,7 @@ pydantic-settings==2.9.1
     #   maggma
 pydash==8.0.5
     # via maggma
-pymatgen==2025.5.28
+pymatgen==2025.6.14
     # via
     #   emmet-core
     #   mp-api (pyproject.toml)
@@ -159,21 +159,21 @@ pytz==2025.2
     #   pandas
 pyyaml==6.0.2
     # via pybtex
-pyzmq==26.4.0
+pyzmq==27.0.0
     # via maggma
 referencing==0.36.2
     # via
     #   jsonschema
     #   jsonschema-specifications
-requests==2.32.3
+requests==2.32.4
     # via
     #   mp-api (pyproject.toml)
     #   pymatgen
 rpds-py==0.25.1
     # via
     #   jsonschema
     #   referencing
-ruamel-yaml==0.18.12
+ruamel-yaml==0.18.14
     # via
     #   maggma
     #   monty

requirements/requirements-ubuntu-latest_py3.11_extras.txt

@@ -6,6 +6,8 @@
 #
 aioitertools==0.12.0
     # via maggma
+alabaster==1.0.0
+    # via sphinx
 annotated-types==0.7.0
     # via pydantic
 arrow==1.3.0
@@ -19,27 +21,29 @@ attrs==25.3.0
     #   jsonlines
     #   jsonschema
     #   referencing
+babel==2.17.0
+    # via sphinx
 bcrypt==4.3.0
     # via paramiko
 bibtexparser==1.4.3
     # via pymatgen
 boltons==25.0.0
     # via mpcontribs-client
-boto3==1.38.31
+boto3==1.38.37
     # via
     #   maggma
     #   mp-api (pyproject.toml)
-botocore==1.38.31
+botocore==1.38.37
     # via
     #   boto3
     #   s3transfer
 bravado==12.0.1
     # via mpcontribs-client
 bravado-core==6.1.1
     # via bravado
-cachetools==6.0.0
+cachetools==6.1.0
     # via mpcontribs-client
-certifi==2025.4.26
+certifi==2025.6.15
     # via requests
 cffi==1.17.1
     # via
@@ -51,9 +55,9 @@ charset-normalizer==3.4.2
     # via requests
 contourpy==1.3.2
     # via matplotlib
-coverage[toml]==7.8.2
+coverage[toml]==7.9.1
     # via pytest-cov
-cryptography==45.0.3
+cryptography==45.0.4
     # via paramiko
 custodian==2025.5.12
     # via mp-api (pyproject.toml)
@@ -68,7 +72,9 @@ dnspython==2.7.0
     #   maggma
     #   pyisemail
     #   pymongo
-emmet-core[all]==0.84.7rc3
+docutils==0.21.2
+    # via sphinx
+emmet-core[all]==0.84.8
     # via mp-api (pyproject.toml)
 executing==2.2.0
     # via stack-data
@@ -86,7 +92,7 @@ flexcache==0.3
     # via pint
 flexparser==0.4
     # via pint
-fonttools==4.58.1
+fonttools==4.58.4
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
@@ -100,6 +106,8 @@ idna==3.10
     #   requests
 imageio==2.37.0
     # via scikit-image
+imagesize==1.4.1
+    # via sphinx
 importlib-resources==6.5.2
     # via swagger-spec-validator
 inflect==7.5.0
@@ -114,6 +122,8 @@ isoduration==20.11.0
     # via jsonschema
 jedi==0.19.2
     # via ipython
+jinja2==3.1.6
+    # via sphinx
 jmespath==1.0.1
     # via
     #   boto3
@@ -147,6 +157,8 @@ lazy-loader==0.4
     # via scikit-image
 maggma==0.71.5
     # via mp-api (pyproject.toml)
+markupsafe==3.0.2
+    # via jinja2
 matminer==0.9.3
     # via robocrys
 matplotlib==3.10.3
@@ -192,20 +204,20 @@ mpmath==1.3.0
     # via sympy
 mrcfile==1.5.4
     # via griddataformats
-msgpack==1.1.0
+msgpack==1.1.1
     # via
     #   bravado
     #   bravado-core
     #   maggma
     #   mmtf-python
     #   mp-api (pyproject.toml)
-mypy==1.16.0
+mypy==1.16.1
     # via mp-api (pyproject.toml)
 mypy-extensions==1.1.0
     # via
     #   mp-api (pyproject.toml)
     #   mypy
-narwhals==1.41.0
+narwhals==1.43.0
     # via plotly
 networkx==3.5
     # via
@@ -258,6 +270,7 @@ packaging==25.0
     #   plotly
     #   pytest
     #   scikit-image
+    #   sphinx
     #   statsmodels
 palettable==3.3.3
     # via pymatgen
@@ -298,7 +311,9 @@ plotly==6.1.2
     #   pymatgen
     #   solvation-analysis
 pluggy==1.6.0
-    # via pytest
+    # via
+    #   pytest
+    #   pytest-cov
 pre-commit==4.2.0
     # via mp-api (pyproject.toml)
 prompt-toolkit==3.0.51
@@ -323,7 +338,7 @@ pycodestyle==2.13.0
     #   mp-api (pyproject.toml)
 pycparser==2.22
     # via cffi
-pydantic==2.11.5
+pydantic==2.11.7
     # via
     #   emmet-core
     #   maggma
@@ -343,9 +358,10 @@ pygments==2.19.1
     #   ipython
     #   ipython-pygments-lexers
     #   pytest
+    #   sphinx
 pyisemail==2.0.1
     # via mpcontribs-client
-pymatgen==2025.5.28
+pymatgen==2025.6.14
     # via
     #   emmet-core
     #   matminer
@@ -382,7 +398,7 @@ pytest==8.4.0
     #   solvation-analysis
 pytest-asyncio==1.0.0
     # via mp-api (pyproject.toml)
-pytest-cov==6.1.1
+pytest-cov==6.2.1
     # via mp-api (pyproject.toml)
 pytest-mock==3.14.1
     # via mp-api (pyproject.toml)
@@ -409,22 +425,23 @@ pyyaml==6.0.2
     #   pre-commit
     #   pybtex
     #   swagger-spec-validator
-pyzmq==26.4.0
+pyzmq==27.0.0
     # via maggma
-rdkit==2025.3.2
+rdkit==2025.3.3
     # via solvation-analysis
 referencing==0.36.2
     # via
     #   jsonschema
     #   jsonschema-specifications
-requests==2.32.3
+requests==2.32.4
     # via
     #   bravado
     #   bravado-core
     #   matminer
     #   mp-api (pyproject.toml)
     #   pymatgen
     #   requests-futures
+    #   sphinx
 requests-futures==1.0.2
     # via mpcontribs-client
 rfc3339-validator==0.1.4
@@ -433,11 +450,13 @@ rfc3986-validator==0.1.1
     # via jsonschema
 robocrys==0.2.11
     # via emmet-core
+roman-numerals-py==3.1.0
+    # via sphinx
 rpds-py==0.25.1
     # via
     #   jsonschema
     #   referencing
-ruamel-yaml==0.18.12
+ruamel-yaml==0.18.14
     # via
     #   custodian
     #   maggma
@@ -487,13 +506,29 @@ six==1.17.0
     #   rfc3339-validator
 smart-open==7.1.0
     # via mp-api (pyproject.toml)
+snowballstemmer==3.0.1
+    # via sphinx
 solvation-analysis==0.4.1
     # via emmet-core
 spglib==2.6.0
     # via
     #   pymatgen
     #   robocrys
     #   seekpath
+sphinx==8.2.3
+    # via mp-api (pyproject.toml)
+sphinxcontrib-applehelp==2.0.0
+    # via sphinx
+sphinxcontrib-devhelp==2.0.0
+    # via sphinx
+sphinxcontrib-htmlhelp==2.1.0
+    # via sphinx
+sphinxcontrib-jsmath==1.0.1
+    # via sphinx
+sphinxcontrib-qthelp==2.0.0
+    # via sphinx
+sphinxcontrib-serializinghtml==2.0.0
+    # via sphinx
 sshtunnel==0.4.0
     # via maggma
 stack-data==0.6.3
@@ -516,7 +551,7 @@ threadpoolctl==3.6.0
     #   scikit-learn
 tidynamics==1.1.2
     # via transport-analysis
-tifffile==2025.6.1
+tifffile==2025.6.11
     # via scikit-image
 tqdm==4.67.1
     # via
@@ -535,7 +570,7 @@ typeguard==4.4.3
     # via inflect
 types-python-dateutil==2.9.0.20250516
     # via arrow
-types-requests==2.32.0.20250602
+types-requests==2.32.4.20250611
     # via mp-api (pyproject.toml)
 types-setuptools==80.9.0.20250529
     # via mp-api (pyproject.toml)