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Bumps the python-requirements group with 21 updates in the /envs directory:

Package From To
simpleitk 2.5.0 2.5.3
coverage 7.8.2 7.13.0
jupyterlab 4.4.3 4.5.1
kaggle 1.7.4.5 1.8.2
matplotlib 3.10.1 3.10.8
monai 1.4.0 1.5.1
nibabel 5.3.2 5.3.3
pandas 2.2.3 2.3.3
plotly 6.1.2 6.5.0
pre-commit 4.2.0 4.5.1
pytest-cov 6.1.1 7.0.0
pytest-mock 3.14.1 3.15.1
pytest 8.3.5 9.0.2
rich 14.0.0 14.2.0
ruff 0.11.12 0.14.10
safetensors 0.5.3 0.7.0
scikit-image 0.25.2 0.26.0
scikit-learn 1.6.1 1.8.0
scipy 1.15.2 1.16.3
timm 1.0.15 1.0.22
wandb 0.19.11 0.23.1

Updates simpleitk from 2.5.0 to 2.5.3

Release notes

Sourced from simpleitk's releases.

Release v2.5.3

To upgrade to this Python binary package run: pip install --upgrade --pre simpleitk --find-links https://github.com/SimpleITK/SimpleITK/releases/tag/v2.5.3

What's Changed

Security Fixes

  • Addresses Out-of-Bounds vulnerability with a malformed DICOM file containing encapsulated PixelData fragments. The fix is contained in ITK 5.4.5.

Full Changelog: SimpleITK/SimpleITK@v2.5.2...v2.5.3

Release v2.5.2

To upgrade to this Python binary package run: pip install --upgrade --pre simpleitk --find-links https://github.com/SimpleITK/SimpleITK/releases/tag/v2.5.2

What's Changed

Full Changelog: SimpleITK/SimpleITK@v2.5.0...v2.5.2

Commits
  • 31617da Update to version 2.5.3
  • 5937c05 Merge pull request #2449 from blowekamp/update_itk_5.4.5
  • d438c32 Merge pull request #2450 from blowekamp/fix_package_checksums_step
  • f1b459d Update to windows-2022 in Build CI on release
  • 15c52b3 Update superbuild ITK version to 5.4.5 release
  • 99250b5 Fix generation of checksums
  • 54242a2 Merge pull request #2446 from blowekamp/fix_release_package_docker
  • 88292a2 Update docker based package builds to use external source
  • 8b3b92a Merge pull request #2419 from blowekamp/support_rosetta
  • a6f07f0 Use rossetta arch command to run python executable
  • Additional commits viewable in compare view

Updates coverage from 7.8.2 to 7.13.0

Changelog

Sourced from coverage's changelog.

Version 7.13.0 — 2025-12-08

  • Feature: coverage.py now supports :file:.coveragerc.toml configuration files. These files use TOML syntax and take priority over :file:pyproject.toml but lower priority than :file:.coveragerc files. Closes issue 1643_ thanks to Olena Yefymenko <pull 1952_>_.

  • Fix: we now include a permanent .pth file which is installed with the code, fixing issue 2084. In 7.12.1b1 this was done incorrectly: it didn't work when using the source wheel (py3-none-any). This is now fixed. Thanks, Henry Schreiner <pull 2100_>.

  • Deprecated: when coverage.py is installed, it creates three command entry points: coverage, coverage3, and coverage-3.10 (if installed for Python 3.10). The second and third of these are not needed and will eventually be removed. They still work for now, but print a message about their deprecation.

.. _issue 1643: coveragepy/coveragepy#1643 .. _pull 1952: coveragepy/coveragepy#1952 .. _pull 2100: coveragepy/coveragepy#2100

.. _changes_7-12-1b1:

Version 7.12.1b1 — 2025-11-30

  • Fix: coverage.py now includes a permanent .pth file in the distribution which is installed with the code. This fixes issue 2084_: failure to patch for subprocess measurement when site-packages is not writable.

.. _issue 2084: coveragepy/coveragepy#2084

.. _changes_7-12-0:

Version 7.12.0 — 2025-11-18

  • The HTML report now shows separate coverage totals for statements and branches, as well as the usual combined coverage percentage. Thanks to Ryuta Otsuka for the discussion <issue 2081_>_ and the implementation <pull 2085_>_.

  • The JSON report now includes separate coverage totals for statements and branches, thanks to Ryuta Otsuka <pull 2090_>_.

  • Fix: except* clauses were not handled properly under the "sysmon"

... (truncated)

Commits
  • 52fde9c docs: sample HTML for 7.13.0
  • 69de009 docs: prep for 7.13.0
  • 01387fc docs: tweak changes
  • 60206e8 chore: make edit_for_release
  • 78cfd57 docs: tweak CHANGES.rst
  • 21e726f feat: support .coveragerc.toml for configuration (#1952)
  • 3914e50 chore: bump the action-dependencies group with 2 updates (#2102)
  • d5e7c3a test: no need to group tests by needs_pth
  • ed516c4 test: fix metacov again
  • da833a1 fix: use Development Status classifier properly. #2101
  • Additional commits viewable in compare view

Updates jupyterlab from 4.4.3 to 4.5.1

Release notes

Sourced from jupyterlab's releases.

v4.5.1

4.5.1

(Full Changelog)

Deprecated features

Enhancements made

Bugs fixed

Maintenance and upkeep improvements

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​Darshan808 (activity) | @​FoSuCloud (activity) | @​HaudinFlorence (activity) | @​ianthomas23 (activity) | @​jasongrout (activity) | @​jtpio (activity) | @​krassowski (activity) | @​martinRenou (activity) | @​meeseeksmachine (activity) | @​Meriem-BenIsmail (activity) | @​prajyot-porje (activity) | @​xc2 (activity)

v4.5.0

4.5.0

(Full Changelog)

New features added

... (truncated)

Commits

Updates kaggle from 1.7.4.5 to 1.8.2

Changelog

Sourced from kaggle's changelog.

Changelog

1.8.1

  • Fix memory exhaustion when downloading large files (#869)
  • Add python-dateutil to pyproject.toml dependencies (#866)

1.8.0

  • Fix resumable download error (#865)
  • Fix dataset version spec (#862)
  • Add machine_shape to the metadata of kaggle kernels pull (#856)
  • Add pagination options to models
  • Add pagination options for submissions (#832)
  • Add pagination options to list commands (#815)
  • Add canonical aliases for push/pull (#787)
  • Add parquet as a filter option (#786)
  • Add variations as alt for instances (#784)
  • Enable (and rename) synonyms i and v (#782)

1.7.5.0 (not released)

  • Require Python 3.11.
  • Add KernelExecutionType (#775)
  • Output docker_image as part of the pull metadata (#773)
  • Allow user to specify docker_image during kernel push (#774)
  • Add kernel version type to save request (#771)
  • Add tests for delete and de-flake (#769)
  • Rename "yes" params and make confirmation consistent (#765)
  • Fix bug that caused double serialization (#764)
  • Add kaggle kernels delete (#762)
  • Add test for dataset_delete() and make script more robust (#760)
  • Check dataset status before uploading (#759)
  • Add kaggle datasets delete (#755)
  • Fix calls to download_file() (#752)
  • Add type annotations for mypy (#746)
  • Use Optional[...] in cases where the proto file does (#744)
  • Improve some type hints and fix a bug (#741)
  • Reformat everything with black (#737)
  • Add more type hints (#736)
  • Add type annotations to main file (#735)
  • Bulk reformat docstrings (#732)
  • Merge envars before sending a request (#729)
  • Use PROD if no environment is specified. (#726)
  • Add a no response action to auto-close issues (#723)

1.7.4.2

  • Fix a problem in downloading kernel output files.

... (truncated)

Commits

Updates matplotlib from 3.10.1 to 3.10.8

Release notes

Sourced from matplotlib's releases.

REL: v3.10.8

This is a bugfix release in the 3.10.x series.

The primary highlights of this release are:

  • Properly allow freethreaded mode in the MacOS backend
  • Better error handling for MacOS backend

REL: v3.10.7

This is the latest bugfix release in the 3.10.x series.

The most important update in this release is that the minimum version of pyparsing has been updated to version 3.0.

REL: v3.10.6

This is a bugfix release in the 3.10.x series.

Highlights from this release include:

- Fix regression of hi-dpi support for Qt
- Fix race condition in TexManager.make_dvi & make_png
- Various documentation and other bugfixes

REL: v3.10.5

This is the fourth bugfix release of the 3.10.x series.

Included in this release is distributed wheels for Python 3.14 (including freethreaded) and Windows ARM.

There are also several smaller bugfixes.

REL: v3.10.3

This is the third bugfix release of the 3.10.x series

Commits
  • 1392cbe REL: v3.10.8
  • 0b9ebb3 Doc release prep v3.10.8
  • bc7b5c4 Merge branch 'v3.10.7-doc' into v3.10.x
  • 86b38d3 Github stats v3.10.8
  • 9512188 Merge pull request #30717 from meeseeksmachine/auto-backport-of-pr-30714-on-v...
  • d300769 Backport PR #30714: FIX: Gracefully handle numpy arrays as input to check_in_...
  • 799bc95 Merge pull request #30711 from ngoldbaum/v3.10.x
  • 134000b Merge pull request #30697 from ngoldbaum/fix-plotting-on-worker-threads
  • 5b8e219 TST: Run macosx backends in a subprocess
  • 878e71a Backport PR #29810: Declare free-threaded support in MacOS backend extension ...
  • Additional commits viewable in compare view

Updates monai from 1.4.0 to 1.5.1

Release notes

Sourced from monai's releases.

1.5.1

Added

  • PyTorch 2.7 and 2.8 support (#8429, #8530)
  • Create SECURITY.md (#8546)
  • Add kwargs in array and functional file (#8508)
  • Add .coderabbit.yaml File (#8513)
  • Add input validation to ImageStats class (#8501)
  • Add support for optional conditioning in PatchInferer, SliceInferer, and SlidingWindowInferer (#8400)
  • Add classifier free guidance unconditioned value (#8562)
  • Improved DiffusionModelEncoder to support output linear layers of different dimensions (#8578, #8580)

Fixed

  • Fix for insecure zip file extraction to address GHSA-x6ww-pf9m-m73m (#8568)
  • Fix for insecure use of torch.load and pickle to address GHSA-6vm5-6jv9-rjpj and GHSA-p8cm-mm2v-gwjm (#8566)
  • Torchvision fix for loading pretrained weights using current syntax (#8563)
  • Fix bug in MAISI vae (#8517)
  • Throw exception on invalid images in retinanet detector (#8515)
  • Fix: HistogramNormalized doc (#8543)
  • Fix build failure by pinning pyamg to versions below 5.3.0 (#8548)
  • Fix hardcoded input dim in DiffusionModelEncoder (#8514)
  • Fix for gdown downloading fails (#8576)

Changed

  • Update README badges to add research paper citations number (#8494)
  • CI: Add custom timeout to ci job in order to save resources (#8504)
  • Improve documentation on the datalist format (#8539)
  • Tests Cleanup and refactor (#8405, #8535)
  • Improve Orientation transform to use the "space" (LPS vs RAS) of a metatensor by default (#8473)
  • Updated supported version of Huggingface Transformers (#8574)

New Contributors

Full Changelog: Project-MONAI/MONAI@1.5.0...1.5.1

1.5.0

Added

  • Add platform-specific constraints to setup.cfg (#8260)
  • Add PythonicWorkflow (#8151)
  • Add SM architecture version check (#8199)
  • Add MedNext implementation (#8004)
  • Added a top button to CONSTRIBUTING.md (#8163)

... (truncated)

Changelog

Sourced from monai's changelog.

[1.5.1] - 2025-09-22

What's Changed

Added

  • PyTorch 2.7 and 2.8 support (#8429, #8530)
  • Create SECURITY.md (#8546)
  • Add kwargs in array and functional file (#8508)
  • Add .coderabbit.yaml File (#8513)
  • Add input validation to ImageStats class (#8501)
  • Add support for optional conditioning in PatchInferer, SliceInferer, and SlidingWindowInferer (#8400)
  • Add classifier free guidance unconditioned value (#8562)
  • Improved DiffusionModelEncoder to support output linear layers of different dimensions (#8578, #8580)

Fixed

  • Fix for insecure zip file extraction to address GHSA-x6ww-pf9m-m73m (#8568)
  • Fix for insecure use of torch.load and pickle to address GHSA-6vm5-6jv9-rjpj and GHSA-p8cm-mm2v-gwjm (#8566)
  • Torchvision fix for loading pretrained weights using current syntax (#8563)
  • Fix bug in MAISI vae (#8517)
  • Throw exception on invalid images in retinanet detector (#8515)
  • Fix: HistogramNormalized doc (#8543)
  • Fix build failure by pinning pyamg to versions below 5.3.0 (#8548)
  • Fix hardcoded input dim in DiffusionModelEncoder (#8514)
  • Fix for gdown downloading fails (#8576)

Changed

  • Update README badges to add research paper citations number (#8494)
  • CI: Add custom timeout to ci job in order to save resources (#8504)
  • Improve documentation on the datalist format (#8539)
  • Tests Cleanup and refactor (#8405, #8535)
  • Improve Orientation transform to use the "space" (LPS vs RAS) of a metatensor by default (#8473)
  • Updated supported version of Huggingface Transformers (#8574)

[1.5.0] - 2025-06-13

What's Changed

Added

  • Add platform-specific constraints to setup.cfg (#8260)
  • Add PythonicWorkflow (#8151)
  • Add SM architecture version check (#8199)
  • Add MedNext implementation (#8004)
  • Added a top button to CONSTRIBUTING.md (#8163)
  • Adding CODEOWNERS (#8457)
  • Restormer Implementation (#8312)
  • Add rectified flow noise scheduler for accelerated diffusion model (#8374)
  • Add prediction type for rflow scheduler (#8386)
  • Add Average Precision to metrics (#8089)
  • Implementation of a Masked Autoencoder for representation learning (#8152)
  • Implement TorchIO transforms wrapper analogous to TorchVision transfo… (#7579)
  • 8328 nnunet bundle integration (#8329)
  • Adding Support Policy + Doc Updates (#8458)

... (truncated)

Commits

Updates nibabel from 5.3.2 to 5.3.3

Release notes

Sourced from nibabel's releases.

5.3.3

DOI

Release notes

Bug-fix release in the 5.3.x series.

Bug fixes

  • Fix frame order for single-frame DICOM files (pr/1387) (Brendan Moloney, reviewed by CM)
  • Replace :class:dict literal with :class:set in test. (pr/1382) (CM)

Full Changelog: nipy/nibabel@5.3.2...5.3.3

Changelog

Sourced from nibabel's changelog.

5.3.3 (Friday 5 December 2025)

Bug-fix release in the 5.3.x series.

Bug fixes

  • Fix frame order for single-frame DICOM files (pr/1387) (Brendan Moloney, reviewed by CM)
  • Replace :class:dict literal with :class:set in test. (pr/1382) (CM)
Commits

Updates pandas from 2.2.3 to 2.3.3

Release notes

Sourced from pandas's releases.

Pandas 2.3.3

We are pleased to announce the release of pandas 2.3.3. This release includes some improvements and fixes to the future string data type (preview feature for the upcoming pandas 3.0). We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes. Pandas 2.3.3 supports Python 3.9 and higher, and is the first release to support Python 3.14.

The release will be available on the conda-forge channel:

conda install pandas --channel conda-forge

Or via PyPI:

python3 -m pip install --upgrade pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Pandas 2.3.2

We are pleased to announce the release of pandas 2.3.2. This release includes some improvements and fixes to the future string data type (preview feature for the upcoming pandas 3.0). We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes. Pandas 2.3.2 supports Python 3.9 and higher.

The release will be available on the conda-forge channel:

conda install pandas --channel conda-forge

Or via PyPI:

python3 -m pip install --upgrade pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Pandas 2.3.1

We are pleased to announce the release of pandas 2.3.1. This release includes some improvements and fixes to the future string data type (preview feature for the upcoming pandas 3.0). We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes. Pandas 2.3.1 supports Python 3.9 and higher.

The release will be available on the conda-forge channel:

conda install pandas --channel conda-forge

Or via PyPI:

... (truncated)

Commits
  • 9c8bc3e RLS: 2.3.3
  • 6aa788a [backport 2.3.x] DOC: prepare 2.3.3 whatsnew notes for release (#62499) (#62508)
  • b64f0df [backport 2.3.x] BUG: avoid validation error for ufunc with string[python] ar...
  • 058eb2b [backport 2.3.x] BUG: String[pyarrow] comparison with mixed object (#62424) (...
  • 2ca088d [backport 2.3.x] DEPR: remove the Period resampling deprecation (#62480) (#62...
  • 92bf98f [backport 2.3.x] BUG: fix .str.isdigit to honor unicode superscript for older...
  • e57c7d6 Backport PR #62452 on branch 2.3.x (TST: Adjust tests for numexpr 2.13) (#62454)
  • e0fe9a0 Backport to 2.3.x: REGR: from_records not initializing subclasses properly (#...
  • 23a1085 BUG: improve future warning for boolean operations with missaligned indexes (...
  • 6113696 Backport PR #62396 on branch 2.3.x (PKG/DOC: indicate Python 3.14 support in ...
  • Additional commits viewable in compare view

Updates plotly from 6.1.2 to 6.5.0

Release notes

Sourced from plotly's releases.

v6.5.0

Updated

  • Update plotly.js from version 3.2.0 to version 3.3.0. See the plotly.js release notes for more information. [#5421]. Notable changes include:
    • Add hovertemplate for candlestick and ohlc traces [#7619]

Fixed

  • Fix bug where numpy datetime contained in Python list was converted to integer [#5415]

Full Changelog: plotly/plotly.py@v6.4.0...v6.5.0

v6.4.0

Updated

  • Update plotly.js from version 3.1.1 to version 3.2.0. See the plotly.js release notes for more information. [#5357]. Notable changes include:
    • Add hovertemplatefallback and texttemplatefallback attributes [#7577]
    • Add "SI extended" formatting rule for tick exponents on axis labels, allowing values to be displayed with extended SI prefixes (e.g., femto, pico, atto) [#7249]

Deprecated

  • Deprecate create_hexbin_mapbox in favor of create_hexbin_map, update related function calls [5358], with thanks to @​ajlien for the contribution!

v6.3.1

Updated

  • Update Plotly.js from version 3.1.0 to version 3.1.1. See the Plotly.js release notes for more information. [#5357]. Notable changes include:
    • Fix issue preventing Scattergl plots with text elements from rendering [plotly.js#7563]
  • Use native legends when converting from matplotlib [#5312], with thanks to @​robertoffmoura to the contribution!
  • Allow shared_yaxes to work with secondary axes [#5180], with thanks to @​gmjw for the contribution!

Fixed

  • Fix issue where width/height in plot layout were not respected during Kaleido image export [#5325]
  • Fix typo in default argument to _ternary_contour.py [#5315], with thanks to @​Lexachoc for the contribution!
  • Fix incorrect fig.show() behavior when ipython is installed [#5258]

Full Changelog: plotly/plotly.py@v6.3.0...v6.3.1

v6.3.0

Updated

  • Updated Plotly.js from version 3.0.1 to version 3.1.0. See the plotly.js release notes for more information. [#5318]

Added

  • Exposed plotly.io.get_chrome() as a function which can be called from within a Python script. [#5282]

Fixed

  • Resolved issue causing extraneous engine deprecation warnings [#5287], with thanks to @​jdbeel for the contribution!

v6.2.0

Added

  • Add SRI (Subresource Integrity) hash support for CDN script tags when using include_plotlyjs='cdn'. This enhances security by ensuring browser verification of CDN-served plotly.js files [#5165] (with thanks to @​ddworken)

Fixed

  • Allow setting Plotly.js path via pio.defaults [#5207]

... (truncated)

Changelog

Sourced from plotly's changelog.

[6.5.0] - 2025-11-17

Updated

  • Update plotly.js from version 3.2.0 to version 3.3.0. See the plotly.js release notes for more information. [#5421]. Notable changes include:
    • Add hovertemplate for candlestick and ohlc traces [#7619]

Fixed

  • Fix bug where numpy datetime contained in Python list was converted to integer [#5415]

[6.4.0] - 2025-11-02

Updated

  • Update plotly.js from version 3.1.1 to version 3.2.0. See the plotly.js release notes for more information. [#5357]. Notable changes include:
    • Add hovertemplatefallback and texttemplatefallback attributes [#7577]
    • Add "SI extended" formatting rule for tick exponents on axis labels, allowing values to be displayed with extended SI prefixes (e.g., femto, pico, atto) [#7249]

Deprecated

  • Deprecate create_hexbin_mapbox in favor of create_hexbin_map, update related function calls [5358], with thanks to @​ajlien for the contribution!

[6.3.1] - 2025-10-02

Updated

  • Update Plotly.js from version 3.1.0 to version 3.1.1. See the Plotly.js release notes for more information. [#5357]. Notable changes include:
    • Fix issue preventing Scattergl plots with text elements from rendering [plotly.js#7563]
  • Use native legends when converting from matplotlib [#5312], with thanks to @​robertoffmoura to the contribution!
  • Allow shared_yaxes to work with secondary axes [#5180], with thanks to @​gmjw for the contribution!

Fixed

  • Fix issue where width/height in plot layout were not respected during Kaleido image export [#5325]
  • Fix typo in default argument to _ternary_contour.py [#5315], with thanks to @​Lexachoc for the contribution!
  • Fix incorrect fig.show() behavior when ipython is installed [#5258]

[6.3.0] - 2025-08-12

Updated

  • Updated Plotly.js from version 3.0.1 to version 3.1.0. See the Plotly.js release notes for more information. [#5318]

Added

  • Exposed plotly.io.get_chrome() as a function which can be called from within a Python script. [#5282]

Fixed

@dependabot
Bump the python-requirements group across 1 directory with 21 updates
fe77ece 
Bumps the python-requirements group with 21 updates in the /envs directory:

| Package | From | To |
| --- | --- | --- |
| [simpleitk](https://github.com/SimpleITK/SimpleITK) | `2.5.0` | `2.5.3` |
| [coverage](https://github.com/coveragepy/coveragepy) | `7.8.2` | `7.13.0` |
| [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.4.3` | `4.5.1` |
| [kaggle](https://github.com/Kaggle/kaggle-api) | `1.7.4.5` | `1.8.2` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.1` | `3.10.8` |
| [monai](https://github.com/Project-MONAI/MONAI) | `1.4.0` | `1.5.1` |
| [nibabel](https://github.com/nipy/nibabel) | `5.3.2` | `5.3.3` |
| [pandas](https://github.com/pandas-dev/pandas) | `2.2.3` | `2.3.3` |
| [plotly](https://github.com/plotly/plotly.py) | `6.1.2` | `6.5.0` |
| [pre-commit](https://github.com/pre-commit/pre-commit) | `4.2.0` | `4.5.1` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `6.1.1` | `7.0.0` |
| [pytest-mock](https://github.com/pytest-dev/pytest-mock) | `3.14.1` | `3.15.1` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.5` | `9.0.2` |
| [rich](https://github.com/Textualize/rich) | `14.0.0` | `14.2.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.11.12` | `0.14.10` |
| [safetensors](https://github.com/huggingface/safetensors) | `0.5.3` | `0.7.0` |
| [scikit-image](https://github.com/scikit-image/scikit-image) | `0.25.2` | `0.26.0` |
| [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.6.1` | `1.8.0` |
| [scipy](https://github.com/scipy/scipy) | `1.15.2` | `1.16.3` |
| [timm](https://github.com/huggingface/pytorch-image-models) | `1.0.15` | `1.0.22` |
| [wandb](https://github.com/wandb/wandb) | `0.19.11` | `0.23.1` |



Updates `simpleitk` from 2.5.0 to 2.5.3
- [Release notes](https://github.com/SimpleITK/SimpleITK/releases)
- [Commits](SimpleITK/SimpleITK@v2.5.0...v2.5.3)

Updates `coverage` from 7.8.2 to 7.13.0
- [Release notes](https://github.com/coveragepy/coveragepy/releases)
- [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst)
- [Commits](coveragepy/coveragepy@7.8.2...7.13.0)

Updates `jupyterlab` from 4.4.3 to 4.5.1
- [Release notes](https://github.com/jupyterlab/jupyterlab/releases)
- [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md)
- [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.4.3...@jupyterlab/lsp@4.5.1)

Updates `kaggle` from 1.7.4.5 to 1.8.2
- [Release notes](https://github.com/Kaggle/kaggle-api/releases)
- [Changelog](https://github.com/Kaggle/kaggle-api/blob/main/CHANGELOG.md)
- [Commits](https://github.com/Kaggle/kaggle-api/commits)

Updates `matplotlib` from 3.10.1 to 3.10.8
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.10.1...v3.10.8)

Updates `monai` from 1.4.0 to 1.5.1
- [Release notes](https://github.com/Project-MONAI/MONAI/releases)
- [Changelog](https://github.com/Project-MONAI/MONAI/blob/dev/CHANGELOG.md)
- [Commits](Project-MONAI/MONAI@1.4.0...1.5.1)

Updates `nibabel` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/nipy/nibabel/releases)
- [Changelog](https://github.com/nipy/nibabel/blob/5.3.3/Changelog)
- [Commits](nipy/nibabel@5.3.2...5.3.3)

Updates `pandas` from 2.2.3 to 2.3.3
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.2.3...v2.3.3)

Updates `plotly` from 6.1.2 to 6.5.0
- [Release notes](https://github.com/plotly/plotly.py/releases)
- [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md)
- [Commits](plotly/plotly.py@v6.1.2...v6.5.0)

Updates `pre-commit` from 4.2.0 to 4.5.1
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v4.2.0...v4.5.1)

Updates `pytest-cov` from 6.1.1 to 7.0.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v6.1.1...v7.0.0)

Updates `pytest-mock` from 3.14.1 to 3.15.1
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-mock@v3.14.1...v3.15.1)

Updates `pytest` from 8.3.5 to 9.0.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.5...9.0.2)

Updates `rich` from 14.0.0 to 14.2.0
- [Release notes](https://github.com/Textualize/rich/releases)
- [Changelog](https://github.com/Textualize/rich/blob/master/CHANGELOG.md)
- [Commits](Textualize/rich@v14.0.0...v14.2.0)

Updates `ruff` from 0.11.12 to 0.14.10
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.11.12...0.14.10)

Updates `safetensors` from 0.5.3 to 0.7.0
- [Release notes](https://github.com/huggingface/safetensors/releases)
- [Changelog](https://github.com/huggingface/safetensors/blob/main/RELEASE.md)
- [Commits](huggingface/safetensors@v0.5.3...v0.7.0)

Updates `scikit-image` from 0.25.2 to 0.26.0
- [Release notes](https://github.com/scikit-image/scikit-image/releases)
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt)
- [Commits](scikit-image/scikit-image@v0.25.2...v0.26.0)

Updates `scikit-learn` from 1.6.1 to 1.8.0
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.6.1...1.8.0)

Updates `scipy` from 1.15.2 to 1.16.3
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.15.2...v1.16.3)

Updates `timm` from 1.0.15 to 1.0.22
- [Release notes](https://github.com/huggingface/pytorch-image-models/releases)
- [Commits](huggingface/pytorch-image-models@v1.0.15...v1.0.22)

Updates `wandb` from 0.19.11 to 0.23.1
- [Release notes](https://github.com/wandb/wandb/releases)
- [Changelog](https://github.com/wandb/wandb/blob/main/CHANGELOG.md)
- [Commits](wandb/wandb@v0.19.11...v0.23.1)

---
updated-dependencies:
- dependency-name: simpleitk
  dependency-version: 2.5.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: coverage
  dependency-version: 7.13.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: jupyterlab
  dependency-version: 4.5.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: kaggle
  dependency-version: 1.8.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: matplotlib
  dependency-version: 3.10.8
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: monai
  dependency-version: 1.5.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: nibabel
  dependency-version: 5.3.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: pandas
  dependency-version: 2.3.3
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: plotly
  dependency-version: 6.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pre-commit
  dependency-version: 4.5.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pytest-cov
  dependency-version: 7.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-requirements
- dependency-name: pytest-mock
  dependency-version: 3.15.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pytest
  dependency-version: 9.0.2
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-requirements
- dependency-name: rich
  dependency-version: 14.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: ruff
  dependency-version: 0.14.10
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: safetensors
  dependency-version: 0.7.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: scikit-image
  dependency-version: 0.26.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: scikit-learn
  dependency-version: 1.8.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: scipy
  dependency-version: 1.16.3
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: timm
  dependency-version: 1.0.22
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: wandb
  dependency-version: 0.23.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Dec 22, 2025
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