Make Inputs Optional

[vlilanl]

Updates

• Make inputs to rqcfilter optional
  

  ReadsQC/rqcfilter.wdl

  Lines 7 to 9 in c66e3b2

  	Array[String]? input_files
  	Array[String]? input_fq1
  	Array[String]? input_fq2

Testing

Successfully tested locally

JAWs runs:

• 148455: Interleaved

{
  "rqcfilter.input_files": [
    "https://portal.nersc.gov/project/m3408//test_data/smalltest.int.fastq.gz"
  ],
  "rqcfilter.proj": "nmdc:xxxxxxx",
  "rqcfilter.interleaved": true,
  "rqcfilter.shortRead": true
}

• 148468: Paired

{
    "rqcfilter.input_fq1": [
      "https://portal.nersc.gov/project/m3408//test_data/smalltest.R1.fastq.gz"
    ],
    "rqcfilter.input_fq2": [
      "https://portal.nersc.gov/project/m3408//test_data/smalltest.R2.fastq.gz"
    ],
    "rqcfilter.proj": "nmdc:xxxxxxx",
    "rqcfilter.interleaved": false,
    "rqcfilter.shortRead": true
}

[aclum]

@vlilanl would you please resolve the merge conflicts?

[aclum]

The jaws runs look good.

[aclum]

Why is all the work @chienchi did to add support for ncbi accessions removed?