IPython notebook covering the basics of magnetic resonance analysis
A static version of this notebook is available here.
The source code is available here.
With the source code and a suitable Python environment you can run a "live" version of this notebook on your own computer. This will allow you to make modifications to the notebook and see the results immediately.
You will need Python along with some of its numeric/scientific packages to run this notebook. If you are on Windows I recommend pythonxy. Anaconda is a cross-platform option (Windows, OSX, Linux). On Linux you might also just use your distributions package manager (e.g. apt-get install python-numpy on Debian/Ubuntu).
The specific packages needed for this notebook are:
- numpy
- scipy
- matplotlib
- ipython
- nmrglue
- pydicom
- nibabel