v0.45.0

• Option -R added: A SAM header line specified via cmdline option (e.g. @RG\tID:rg03\tSM:sample02) replaces existing read group lines in the header (if present in a BAM input file; does not apply to FASTQ input). The specified read group will be added to all reads in the output file.

v0.44.1

• Several mapping speed improvements
• Added cmdline flag to force-overwrite existing output files
• Rename stack_limit_abort flag with no_search_limit_recovery

Full Changelog: v0.43.0...v0.44.1

v0.43.0

• Various IO-related improvements

v0.42.1

• Fix fq.gz input detection

v0.42.0

• Fix detection of input file format for some files
• Slightly increase performance in some cases

v0.41.0

• Allow reads in BAM, FASTQ, or FASTQ.GZ format to be passed to mapAD via stdin or file

v0.40.0

(cargo-release) mapad version 0.40.0

v0.39.0

• Report mapping duration in networked mode too
• Report only two alternative alignments
• Fix cause of an infinite loop
• Remove BWA- and mapAD specific BAM tags more precisely

v0.0.38

Full Changelog: v0.0.37...v0.0.38

v0.0.37

Full Changelog: v0.0.35...v0.0.37