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Releases: ms609/Rogue

v2.1.7

01 Jul 14:56
ed0ea01

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  • Improve tip instability calculation in identical tree sets (#29).
  • Improve variable protection.

v2.1.6

29 Nov 13:58

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  • Legend annotations in documentation.
  • Disable parallel evaluation by default in TipInstability(), adding parallel parameter to allow user to override.
  • Use format string in REprintf().

v2.1.5

20 Mar 13:44

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  • Call C functions using symbols, not strings.

v2.1.4

16 Jan 14:35
e18e49b

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  • C2X compliant function prototypes.
  • Remove unused sprintf() calls.

v2.1.3

26 Sep 11:05

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  • ColByStability() gains pal argument to allow specification of custom palettes.

v2.1.2

16 Aug 15:08

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  • Faster rogue detection when edge lengths provided, per report by Joseph Keating.

  • Don't list neverDrop in QuickRogue(fullSeq = TRUE).

v2.1.1

20 Jul 14:17

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  • Handle ColByStability(trees = NULL).

v2.1.0

13 Jan 12:31

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  • Early termination of QuickRogue() when no further improvement possible.

  • Cophenetic() renamed to the more accurate GraphGeodesic().

  • Calculate information content of consensus trees with p > 0.5 (#15).

  • Improve support for multiPhylo objects.

  • New vignette detailing rogue detection with Bayesian tree samples.

v2.0.0

13 Sep 18:52
de35281

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  • Information theoretic rogue detection (per Smith, 2022).

v1.0.0

28 Jun 15:50

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Initial CRAN release