Search results

Modkit pileup - segmentation fault and performance issues in high-coverage regions

Status: Open.

#607 In nanoporetech/modkit;

· mfurla opened on Apr 7, 2026

Discrepancy in calls when running individual modified base pileup and combined modbase pileup

Status: Open.

#606 In nanoporetech/modkit;

· gsukrit opened on Apr 7, 2026

modkit pileup --include-bed silently rejects BED4 files, produces zero valid positions with no warning

Status: Open.

#605 In nanoporetech/modkit;

· sahuno opened on Apr 6, 2026

Invalid data for modkit dmr pair

Status: Open.

#604 In nanoporetech/modkit;

· caballero opened on Apr 1, 2026

Question about DMR pair results

Status: Open.

#603 In nanoporetech/modkit;

· AlvinTam-lab opened on Mar 31, 2026

Can I use modkit pileup on newly identified insertions from ONT reads?

enhancementNew feature or requestNew feature or request

Status: Open.

#602 In nanoporetech/modkit;

· msfalmeida opened on Mar 26, 2026

Please provide a script to compile modkit for macOS

Status: Open.

#600 In nanoporetech/modkit;

· SuhasSrinivasan opened on Mar 23, 2026

--sampling-frac issues in v0.6.1

Status: Open.

#599 In nanoporetech/modkit;

· SuhasSrinivasan opened on Mar 21, 2026

modkit's pileup is unresponsive.

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#596 In nanoporetech/modkit;

· wjx121 opened on Mar 19, 2026

Modkit pileup --modified-bases 5mC and 5hmC returning same results

bugSomething isn't workingSomething isn't working

Status: Open.

#595 In nanoporetech/modkit;

· decibel-tom opened on Mar 18, 2026

modkit pileup for supplementary alignments?

enhancementNew feature or requestNew feature or request

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#594 In nanoporetech/modkit;

· sklages opened on Mar 17, 2026

modkit dmr results- question

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#591 In nanoporetech/modkit;

· khushimamgain opened on Mar 11, 2026