MONSTER Null Model Updates#394
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taraeicher wants to merge 13 commits intonetZoo:develfrom
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…ortant for generating MONSTER nulls. Merge branch 'devel' into monsterNullTMPatch
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Adds a new null model option for MONSTER regNet mode. Instead of permuting the network values to obtain the null (which does not reflect the values we see in real networks), we allow the user to upload an h5 file with a customized set of null networks (e.g. PANDA networks generated from noise). These null networks are then re-centered around the control network to obtain control + noise.
We also add a function that allows p-values to be computed for each cell in the transition matrix rather than obtaining a per-TF p-value.