Skip to content
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 2 additions & 1 deletion nextflow_schema.json
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@
"properties": {
"input": {
"type": "string",
"mimetype": "text/tsv",
"fa_icon": "fab fa-think-peaks",
"description": "Input sample sheet (containing path and meta data of raw or mzML files)",
"help_text": "Use this to specify a sample sheet table including your input raw or mzml files as well as their metainformation such as BatchID, MSstats_Condition and MSstats_BioReplicate (of note: the BioReplicate column is optional). For example:\n\n| Sample | BatchID | MSstats_Condition | MSstats_BioReplicate | Spectra_Filepath |\n| -----|:------------:| ----------:|----------:|------------------------------------------:|\n| 1 | MelanomaStudy | Malignant | BioReplicate1 | data/Melanoma_DIA_standard_rep1.raw |\n| 2 | MelanomaStudy | Malignant | BioReplicate1 | data/Melanoma_DIA_standard_rep2.raw |\n| 3 | MelanomaStudy | Benign | BioReplicate2 | data/SkinTissue_DIA_standard_rep1.raw |\n| 4 | MelanomaStudy | Benign | BioReplicate2 | data/SkinTissue_DIA_standard_rep2.raw |\n| 5 | BreastCancerStudy | Malignant | BioReplicate1 | data/BreastCancer_DIA_standard_rep1.raw |\n| 6 | BreastCancerStudy | Malignant | BioReplicate1 | data/BreastCancer_DIA_standard_rep2.raw |\n| 7 | BreastCancerStudy | Benign | BioReplicate2 | data/BreastTissue_DIA_standard_rep1.raw |\n| 8 | BreastCancerStudy | Benign | BioReplicate2 | data/BreastTissue_DIA_standard_rep2.raw |"
Expand Down Expand Up @@ -996,4 +997,4 @@
"default": false
}
}
}
}