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bed2beta returns on coordinates

Status: Open.

#117 In nloyfer/wgbs_tools;

· AnaGB13 opened on May 21, 2026

Compatibility with Illumina 5-Base Data?

Status: Open.

#115 In nloyfer/wgbs_tools;

· Danielsm8 opened on Apr 22, 2026

wgbstools segment --betas *.beta --min_cpg 2 --max_bp 5000 -o xxx_block.bed

Status: Open.

#114 In nloyfer/wgbs_tools;

· guows123 opened on Apr 13, 2026

Compatibility with biomodal (duet) BAM files?

Status: Open.

#107 In nloyfer/wgbs_tools;

· ativey07 opened on Dec 12, 2025

new release?

Status: Open.

#103 In nloyfer/wgbs_tools;

· douglasgscofield opened on Oct 21, 2025

2 potential issues with bam2pat for nanopore data

Status: Open.

#102 In nloyfer/wgbs_tools;

· e-manduchi opened on Sep 17, 2025

Last 2 columns of output of wgbstools convert -L

Status: Open.

#101 In nloyfer/wgbs_tools;

· yunfeiguo opened on Aug 9, 2025

pyproject.toml specifies python > 3.12 – is this necessary?

Status: Open.

#97 In nloyfer/wgbs_tools;

· blex-max opened on May 15, 2025

what does this warning message mean?

Status: Open.

#95 In nloyfer/wgbs_tools;

· eesiribloom opened on May 13, 2025

Is is presently possible to output the scores for optimal segmentation when using segment?

Status: Open.

#93 In nloyfer/wgbs_tools;

· blex-max opened on Mar 26, 2025

How to resolve the issue of wgbstools mix_pat not being able to parse the hg38 genome?

Status: Open.

#91 In nloyfer/wgbs_tools;

· MyXu0520 opened on Feb 18, 2025

init_genome on hg38 generates incorrect CpG.bed.gz file.

Status: Open.

#90 In nloyfer/wgbs_tools;

· qiangfu-eu opened on Jan 27, 2025