v0.2.0: Add lilace, fix bugs, improve performance

What's Changed

• Baseline qc addition and some bug fixes by @odcambc in #3
• Updates for snakemake v8, some checks for enrich config by @odcambc in #4
• Updates to snakemake v8 by @odcambc in #6
• Change enrich environment to py 3 (temporary) by @odcambc in #10
• R env and rosace improvements by @odcambc in #14
• Updates rosace install, enrich2 upstream by @odcambc in #15
• Bugfix by @odcambc in #24
• Big ol PR - fixing bugs, adding tests, refactor, etc etc.... by @odcambc in #29
• Large cleanup and several edge issues corrected by @odcambc in #33
• Drop WT leak from "_wt" rows in parse_stripped_hgvs by @odcambc in #34
• Hoist Rosace preprocessing out of the per-replicate loop by @odcambc in #35
• Add lilace to dumpling by @odcambc in #36
• Stream BBMap output to BAM instead of writing SAM intermediates by @odcambc in #37
• Split process_counts into per-sample jobs by @odcambc in #38
• Split run_rosace per condition; fix renv race that surfaced under it by @odcambc in #39
• Perf/lilace per condition by @odcambc in #40
• Use list.append() in process_variants rejected path by @odcambc in #41
• Stream GATK CSV reads instead of materializing the whole file by @odcambc in #42
• Stream trim → clean → correct through one rule, no intermediate FASTQs by @odcambc in #43
• Add minimap2 aligner by @odcambc in #44
• Release: Performance improvements by @odcambc in #45

Full Changelog: https://github.com/odcambc/dumpling/commits/v0.2.0