Repositories list

• flatmap_stack

  Public
  C++

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

• batch_tool

  Public
  python script tool for parallel processing of files

  Python

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  Apache License 2.0

  •1•1•0•0•Updated Oct 10, 2024Oct 10, 2024

• instance-loss

  Public
  Official implementation of instance loss functions, a family of instance-level segmentation and detection loss functions, to improve semantic segmentation and detection of multiple instances in biomedical images

  Jupyter Notebook

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  Apache License 2.0

  •1•5•0•0•Updated Sep 2, 2024Sep 2, 2024

• Astrocyte3DMapping

  Public
  MATLAB

  •0•2•0•0•Updated Aug 22, 2024Aug 22, 2024

• Multi-scale-cGAN

  Public
  cGAN based generation of microscopy images conditioned on a neuron shape

  Python

  •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• MetaNet

  Public
  learns to combine segmentations to create a better one

  Jupyter Notebook

  •0•0•0•0•Updated May 24, 2024May 24, 2024

• PatchMorph

  Public
  Apache License 2.0

  •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• ImpRegDec

  Public
  Jupyter Notebook

  •

  MIT License

  •0•6•0•0•Updated Dec 6, 2023Dec 6, 2023

• INRsRegExp

  Public
  Jupyter Notebook

  •

  MIT License

  •3•6•2•0•Updated Dec 5, 2023Dec 5, 2023

• ICI-loss

  Public
  Official implementation of Instance-wise and Center-of-Instance (ICI) segmentation loss

  Jupyter Notebook

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  Apache License 2.0

  •1•12•0•0•Updated Oct 6, 2023Oct 6, 2023

• BMCR

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated May 8, 2023May 8, 2023

• MarmosetGeneAtlas_1Y

  Public
  Jupyter Notebook

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  Apache License 2.0

  •0•2•0•0•Updated Mar 1, 2023Mar 1, 2023

• slurm_tools

  Public
  Python

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  Apache License 2.0

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023