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    26 repositories

    • Garborg_2025_Figures

      Public
      Contains code to generate figures for Garborg_2025 publication
      Assembly
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • Garborg_2025_Code

      Public
      Contains code to analyze data for Garborg_2025 publication
      MATLAB
      •0•0•0•0•Updated Jan 25, 2025Jan 25, 2025

    • Garborg_2025

      Public
      MATLAB
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • Surface-Vessel-FWHM-Diameter

      Public
      Tracks diameter changes of surface vessels from two-photon microscopy
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Jul 1, 2024Jul 1, 2024

    • radon_demo

      Public
      Radon_demo
      MATLAB
      •2•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • Condensor-Mic-Recorder

      Public
      LabVIEW VI to run a short DAQ for evaluating noise levels in imaging areas. Picks up sound frequencies animals can hear that the human ear is unable to detect.
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

    • Turner-JNeurosci2023

      Public
      https://www.jneurosci.org/content/early/2022/12/12/JNEUROSCI.1244-22.2022
      MATLAB
      •
      MIT License
      •1•1•0•0•Updated Apr 8, 2023Apr 8, 2023

    • LabVIEW-DAQ

      Public
      LabVIEW VIs for whisker tracking and force sensor analysis to supplement animal behavioral characterization during two photon microscopy.
      C++
      •
      MIT License
      •2•0•0•0•Updated Apr 8, 2023Apr 8, 2023

    • Drew_Mateo_Turner_Yu_Kleinfeld_Neuron2020

      Public
      Manuscript in press: https://doi.org/10.1016/j.neuron.2020.07.020
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Dec 16, 2022Dec 16, 2022

    • Turner_Gheres_Proctor_Drew_eLife2020

      Public
      https://elifesciences.org/articles/62071
      MATLAB
      •
      MIT License
      •4•0•0•0•Updated Dec 16, 2022Dec 16, 2022

    • Neonate_Arousal_Analysis

      Public
      MATLAB Scripts used for the manual scoring of arousal state and processing of neural and IOS data based on arousal score.
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Dec 10, 2021Dec 10, 2021

    • Pupil-Tracking

      Public
      MATLAB scripts implementing a thresholding in radon space method for tracking pupil diameter
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Dec 8, 2021Dec 8, 2021

    • Thresholding_in_Radon_Space

      Public
      Robust measement of penetrating vessel diameters for two-photon microscopy
      MATLAB
      •1•1•0•0•Updated Dec 1, 2020Dec 1, 2020

    • Fiber_Photometry_Analysis

      Public
      Reposity containing code for the processing of fiber photometry data acquired from Doric Imaging systems
      MATLAB
      •1•0•0•0•Updated Oct 9, 2020Oct 9, 2020

    • Norwood_Gharpure_Turner_Ferrer-Pistone_VanderWal_Drew_Manuscript2020

      Public
      Manuscript in review: https://www.biorxiv.org/content/10.1101/2020.08.19.256297v1
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jun 10, 2020Jun 10, 2020

    • IOS_Analysis

      Public
      Matlab functions used for processing electrophysioloy and IOS data collected from Labview/dalsa camera
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated May 18, 2020May 18, 2020

    • Peristaltic-pumping-of-CSF

      Public
      Mathematica
      •0•0•0•0•Updated May 6, 2020May 6, 2020

    • FSI_3D_PVS

      Public
      3D fluid-structure interaction problems for flow in the Paravascular space
      Java
      •0•0•0•0•Updated Apr 28, 2020Apr 28, 2020

    • Electrode-Fabrication

      Public
      Detailed step-by-step instructions for fabrication of tungsten stereotrodes & stainless steel EMG electrodes.
      MIT License
      •0•0•0•0•Updated Mar 14, 2020Mar 14, 2020

    • MedAssociates_WheelActivity

      Public
      This code reads data into Matlab from Med-Associates wireless activity wheels, and plots actograms.
      MATLAB
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated May 15, 2019May 15, 2019

    • Mouse-Head-Fixation

      Public
      Part files and drawings for the mouse stereotactic head-bars/holders used during IOS & 2P Imaging
      0•1•0•0•Updated May 1, 2019May 1, 2019

    • Whisker-Tracking

      Public
      Quantification of average whisker angle over time using the Radon transform
      MATLAB
      •2•0•0•0•Updated Jan 19, 2019Jan 19, 2019

    • Adams_Winder_Blinder_Drew_DataAndCode

      Public
      0•0•0•0•Updated Apr 7, 2018Apr 7, 2018

    • Winder-Data-Acquisition-Code

      Public
      Includes LabVIEW, Arduino, and MATLAB code for acquiring data on the Intrinsic A imaging rig.
      MATLAB
      •0•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • Winder_Echagarruga_Zhang_Drew_2017_Code

      Public
      MATLAB
      •
      MIT License
      •0•3•0•0•Updated Oct 13, 2017Oct 13, 2017

    • MCS_Linescan

      Public
      Calculates velocity from 2-photon linescan files using Radon transform
      MATLAB
      •1•0•0•0•Updated Sep 8, 2017Sep 8, 2017
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