Repositories list

• masi-qa

  Public
  HTML

  •

  MIT License

  •00 forks•77 stars•00 issues•11 pull request•Updated Oct 2, 2026Oct 2, 2026

• masilab.github.io

  Public
  MASI Lab tool gallery

  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• DeepLungScreening

  Public
  Python

  •22 forks•55 stars•00 issues•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• pymodelvis

  Public
  See what a PyTorch network sees: representation-flow figures and movies

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• HBCD_lost-in-param-space

  Public
  This is the polished version for the poster QR code. Working on it!

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• jev-qa

  Public
  Can Jev AI beat fly on performing QA on medical image processing?

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 17, 2026Sep 17, 2026

• fly-qa

  Public
  A simulated fly brain for performing QA on medical image processing results

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 17, 2026Sep 17, 2026

• ES-1400

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 11, 2026Sep 11, 2026

• BPPR

  Public
  Body-part-phase-regression

  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 27, 2026Aug 27, 2026

• thrive2026

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 12, 2026Aug 12, 2026

• auto_lit_review

  Public
  Based on Sam's ChatGPT review

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 11, 2026Aug 11, 2026

• SPINS

  Public
  Brain atlases are essential for understanding brain structure and function. We provide a myriad of visuals across atlases to explore and communicate anatomy.

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 4, 2026Aug 4, 2026

• open_dive

  Public
  Open Diffusion Visualization for Everyone - BrainHack Vandy 2025

  Python

  •

  MIT License

  •88 forks•99 stars•77 issues•22 pull requests•Updated Jul 15, 2026Jul 15, 2026

• Visualisation_Scripts

  Public
  My visualization scripts.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 9, 2026Jul 9, 2026

• Paired_kernel_harmonization

  Public
  Public repository with companion code for the paper Lung CT harmonization of paired reconstruction kernel images using generative adversarial networks

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• michael_kim_overview

  Public
  Overview of all projects by Michael Kim (kimm58)

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 12, 2026Jun 12, 2026

• Informatics_ADSP

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 11, 2026Jun 11, 2026

• WMLifespan_postprocessing_code

  Public
  Code for the postprocessing container for the WMLifespan brain charts

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 11, 2026Jun 11, 2026

• centerline2atlas

  Public
  Centerline-guided mesh registration tools for mapping deformed ex vivo organ surfaces to 3D anatomical atlases while preserving local geometry.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 27, 2026May 27, 2026

• HARFI_Singularity

  Public
  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 26, 2026May 26, 2026

• GeneralQATool

  Public
  non-bids QA tool

  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 22, 2026May 22, 2026

• BeyondFA_eval

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• N-GSBSS

  Public
  Improved Gray Matter Surface based Spatial Statistics (N-GSBSS) in Neuroimaging Studies

  MATLAB

  •00 forks•99 stars•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• MaCRUISE

  Public
  BSD 3-Clause "New" or "Revised" License

  •11 fork•44 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• SLANTbrainSeg

  Public
  Deep Whole Brain Segmentation Using SLANT Method

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3333 forks•130130 stars•00 issues•11 pull request•Updated May 1, 2026May 1, 2026

• SPIE2026_DermIDS

  Public
  Shell

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• FLAIR_Tract

  Public
  FLAIR Tractography without subject-specific anatomical context.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• Harmonized_NLST_dataset

  Public
  Repository for spatial resampling, kernel harmonization and semantic field of view extension for the National Lung Screening Trial dataset

  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• MAGCE_WMBrainChart

  Public
  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• brainstemseg_singularity

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026