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@PuckerLab Plant Biotechnology and Bioinformatics (PuckerLab)

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    10 repositories

    • Xpression_collect

      Public
      Repository for Xpression_collector - an end-to-end pipeline for RNA-seq data processing
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 30, 2026Jul 30, 2026

    • CoveragePlotter

      Public
      generate coverage figure for genomic region based on BAM
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 22, 2026Jul 22, 2026

    • Urtica_dioica

      Public
      scripts associated with Urtica dioica genome sequence
      genomicslong-readsnettle
      genomicslong-readsnettlelong-read-sequencingstingingstinging-nettle
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 12, 2026May 12, 2026

    • Rubus_armeniacus

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 5, 2026May 5, 2026

    • ODD_annotator

      Public
      automatic annotation of ODDs in plants
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • QuinoaPigmentation

      Public
      Re-analysis of a previous study claiming anthocyanin biosynthesis in quinoa
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • FunctionalAnnotation

      Public
      collection of functional annotation methods in plant genomics
      bioinformaticsgenomicsfunctional-annotation
      bioinformaticsgenomicsfunctional-annotationplant-science
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Feb 24, 2026Feb 24, 2026

    • PlantGenomicsGuide

      Public
      Instructions for all major step in a plant genome sequencing project
      Python
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Feb 24, 2026Feb 24, 2026

    • CYP_Annotator

      Public
      automatic annotation of P450 CYPs
      Python
      •1•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • DivAAs

      Public
      comparison of sequence sets
      Python
      •1•0•0•0•Updated Sep 16, 2025Sep 16, 2025
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