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    143 repositories

    • procancer_fl

      Public
      0•0•0•0•Updated Jun 22, 2026Jun 22, 2026

    • medsam_OCT_layerseg

      Public
      This model creates a single combined segmentation mask for the RNFL, GCL, and IPL layers for OCT bscans. It was first trained on Topcon Maestro and then spectra…
      Python
      •0•0•0•0•Updated Jun 17, 2026Jun 17, 2026

    • Topcon_OCT_Export_Tool

      Public
      Using Topcon's Export Tool to Digest and get FDA info exported to DICOMs
      PowerShell
      •0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • mr-series-selection

      Public
      Series selection, originally for MR Lumbar Spine
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 2, 2026Jun 2, 2026

    • preprocessing

      Public
      `preprocessing` is a python library and CLI tool designed for the purpose of preprocessing MRI data for Deep Learning at QTIM.
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Jun 2, 2026Jun 2, 2026

    • nnunet_wrapper

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 2, 2026Jun 2, 2026

    • CorisDB_Curation

      Public
      Repo for organizing the db scheme of our coris_db
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 1, 2026Jun 1, 2026

    • faf_ga_segmentation_pipeline

      Public
      Python
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • GA_classifier

      Public
      Python
      •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • PAVE-Pathology

      Public
      Python
      •505•0•0•0•Updated Mar 14, 2026Mar 14, 2026

    • Conditional-Diffusion-Editing-basic

      Public
      Python
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • aireadi_fovea_annotation

      Public
      aireadi_fovea_annotation app for ground truths
      HTML
      •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

    • tme-wsi

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 9, 2026Feb 9, 2026

    • fastapi_saml

      Public
      FastAPI and SAML Integration
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • ssl_and_conformal_prediction_cervical_cancer_screening

      Public
      Lessons Learned Applying Self-Supervision and Conformal Prediction to Cervical Cancer Screening
      0•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • https_server

      Public
      Fork of this so QTIM has it.
      Python
      •1•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • dl-prediction-brca-tiph-ext

      Public
      Implementation of the paper "Deep Learning-based Prediction of Breast Cancer Tumor and Immune Phenotypes from Histopathology" by Tiago Gonçalves, Dagoberto Puli…
      Python
      •
      MIT License
      •1•1•0•0•Updated Jan 3, 2026Jan 3, 2026

    • DBT-DINO

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • ga_segmentation_app

      Public
      A web-based application for annotating medical images with vertical line markers.
      Jupyter Notebook
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • federatedLearning_glaucoma_segmentation

      Public
      Federated Learning Optic Disc and Cup Segmentation Model for Glaucoma Monitoring in Color Fundus Photographs(CFPs)
      Python
      •1•5•0•0•Updated Nov 21, 2025Nov 21, 2025

    • Disentanglement

      Public
      Python
      •0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

    • Chronicle

      Public
      An ordered record of events and data
      Python
      •
      Other
      •6•0•0•0•Updated Oct 7, 2025Oct 7, 2025

    • AI-for-BPD-and-PH

      Public
      Deep learning-based prediction of cardiopulmonary disease in retinal images of premature infants
      Python
      •0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

    • chimera

      Public
      Predicting Bacillus Calmette-Guérin(BCG) response subtypes (BRS1, BRS2, BRS3) from H&E-stained histopathology slides of high-risk non-muscle-invasive bladder ca…
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • cervical-cancer-ai

      Public
      Umbrella site + docs
      CSS
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • cervical-dynamics

      Public
      Spatio-temporal modelling of cervical lesion dynamics
      0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • DeepLearn2025

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • creating_dicoms

      Public
      A repo with examples on how to make dicoms and segmentation objects from raw data.
      MIT License
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • Brain-Mets-Seg

      Public
      A repository containing code to segment brain metastases on T1 contrast enhanced MR scans.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jun 25, 2025Jun 25, 2025

    • coral-lab

      Public
      HTML
      •0•0•0•0•Updated Jun 19, 2025Jun 19, 2025
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