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    9 repositories

    • SchwartzLab_ToolBox

      Public
      A set of programs, and scripts that make our life easier analyzing biological data. Python, R and more progLangs
      HTML
      •
      MIT License
      •2•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • PANORAMA

      Public
      R package to process PanMod-seq data
      R
      •
      Other
      •1•0•0•0•Updated Jul 31, 2025Jul 31, 2025

    • txtools

      Public
      An R package to process and analyze transcriptomic data
      R
      •
      Other
      •2•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • bam2ReadEnds

      Public
      Compute paired-end coverage—extracting read start and end positions—in transcriptomic (exon) space based on a BED-12 gene annotation. The script converts a pair…
      R
      •
      MIT License
      •0•0•0•0•Updated May 22, 2025May 22, 2025

    • mini_tutorials

      Public
      A repository for brief tutorials on small scripts, programs or packages that are used in our lab.
      HTML
      •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • ac4c-seq

      Public
      GNU General Public License v3.0
      •3•1•0•0•Updated Jan 17, 2021Jan 17, 2021

    • mazter_mine

      Public
      An R program to calculate cleavage efficiency in MAZTER-seq derived data
      R
      •
      Apache License 2.0
      •4•5•5•0•Updated Nov 9, 2020Nov 9, 2020

    • 3-demultiplexer

      Public
      Demultiplexer for 3' Barcoded libraries
      MIT License
      •1•1•0•0•Updated Aug 2, 2017Aug 2, 2017

    • mRNA_mods

      Public
      A series of tools designed to efficiently analyze RNA-seq epitranscriptomic data
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 29, 2017Jul 29, 2017
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