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Name		Name	Last commit message	Last commit date
Latest commit   History 148 Commits 148 Commits
HA412 Genetic Map		HA412 Genetic Map
Inv_fst		Inv_fst
Inv_ibd/Ha412HO		Inv_ibd/Ha412HO
LD		LD
LDna/annuus		LDna/annuus
MDS_outliers		MDS_outliers
MDS_plots		MDS_plots
PCA		PCA
Pet_30		Pet_30
Ref_comparisons		Ref_comparisons
gea		gea
gwas		gwas
kinship		kinship
perl_tools		perl_tools
resources		resources
scripts		scripts
trees		trees
.gitignore		.gitignore
All_species_sampling_map.pdf		All_species_sampling_map.pdf
Anomalus.poploc.txt		Anomalus.poploc.txt
CR29xHA468.csv		CR29xHA468.csv
HA412-HOxANN1238.csv		HA412-HOxANN1238.csv
HA412-HOxRHA415.csv		HA412-HOxRHA415.csv
HA89xRHA464.csv		HA89xRHA464.csv
Ha412HO.chrlengths.txt		Ha412HO.chrlengths.txt
Ha412HOv2.0-20181130.Nov22k22.geneticmap.extradivisions.txt		Ha412HOv2.0-20181130.Nov22k22.geneticmap.extradivisions.txt
Han412-HO.maskedbases.txt		Han412-HO.maskedbases.txt
NMS373xHopi.csv		NMS373xHopi.csv
Nov22k22.consolidated_split.narrow.hardmask_split.best_cM_Ha412HOv2.0-20181130_sorted.csv		Nov22k22.consolidated_split.narrow.hardmask_split.best_cM_Ha412HOv2.0-20181130_sorted.csv
NuSdBxHA464.csv		NuSdBxHA464.csv
RHA280xRHA801.csv		RHA280xRHA801.csv
Texanus.tranche90.snp.gwas.90.bi.remappedHa412.chr6.dstats.pdf		Texanus.tranche90.snp.gwas.90.bi.remappedHa412.chr6.dstats.pdf
construct.ann.R		construct.ann.R
divide_up_cm_map.pl		divide_up_cm_map.pl
dune_sample_info.txt		dune_sample_info.txt
pop_loc.txt		pop_loc.txt
pop_loc_allnum.txt		pop_loc_allnum.txt
sample_info_apr_2018.tsv		sample_info_apr_2018.tsv
select_samples_for_phylo.pl		select_samples_for_phylo.pl
texanus_chr2_head_missingdata.pdf		texanus_chr2_head_missingdata.pdf
wild_gwas_2018.Rproj		wild_gwas_2018.Rproj
xrqpos2ha412pos.pl		xrqpos2ha412pos.pl
xrqpos2ha412pos_bwa.pl		xrqpos2ha412pos_bwa.pl
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