K8SPS-642: Point-in-time recovery by egegunes · Pull Request #1252 · percona/percona-server-mysql-operator

egegunes · 2026-03-22T15:37:07Z

CHANGE DESCRIPTION

Problem:

Jira: https://perconadev.atlassian.net/browse/K8SPS-642

Based on this proposal: #1251

Cause:
Short explanation of the root cause of the issue if applicable.

Solution:
Short explanation of the solution we are providing with this PR.

CHECKLIST

Jira

Is the Jira ticket created and referenced properly?
Does the Jira ticket have the proper statuses for documentation (Needs Doc) and QA (Needs QA)?
Does the Jira ticket link to the proper milestone (Fix Version field)?

Tests

Is an E2E test/test case added for the new feature/change?
Are unit tests added where appropriate?

Config/Logging/Testability

Are all needed new/changed options added to default YAML files?
Are all needed new/changed options added to the Helm Chart?
Did we add proper logging messages for operator actions?
Did we ensure compatibility with the previous version or cluster upgrade process?
Does the change support oldest and newest supported PS version?
Does the change support oldest and newest supported Kubernetes version?

Copilot

Pull request overview

This PR adds Point-in-Time Recovery (PITR) support to the Percona Server for MySQL Operator by introducing a PITR restore workflow that (1) searches binlogs from the Binlog Server for a requested target (GTID or timestamp) and (2) runs a dedicated PITR restore Job after the base xtrabackup restore completes.

Changes:

Introduces PITR restore orchestration in the restore controller (binlog search → ConfigMap → PITR Job).
Adds a PITR restore Job builder (pkg/pitr) plus a new pitr CLI used inside the PITR Job.
Extends Binlog Server configuration generation (TLS/replication/storage options) and adds binlog search exec helpers.

Reviewed changes

Copilot reviewed 20 out of 20 changed files in this pull request and generated 9 comments.

Show a summary per file

File	Description
pkg/pitr/pitr.go	Builds PITR restore Job + env/volume wiring for PITR execution.
pkg/controller/psrestore/controller.go	Adds PITR config creation, binlog search, and PITR Job lifecycle after base restore.
pkg/controller/ps/controller.go	Updates Binlog Server reconcile: endpoint parsing, S3 URI formatting, TLS/replication/storage config, cleanup.
pkg/binlogserver/search.go	Adds exec-based binlog search helpers returning structured entries.
pkg/binlogserver/config.go	Extends Binlog Server config schema (SSL/TLS, replication mode/rewrite, storage options).
pkg/binlogserver/binlog_server.go	Adds buffer volume/mount, uses shared binary const, changes replicas behavior.
api/v1/perconaservermysqlrestore_types.go	Adds `.spec.pitr` to Restore CRD API types.
api/v1/zz_generated.deepcopy.go	Deepcopy support for new PITR restore spec.
deploy/crd.yaml / deploy/bundle.yaml / deploy/cw-bundle.yaml / config/crd/bases/...	CRD schema updates for `.spec.pitr`.
deploy/cr.yaml	Example CR updates to include PiTR binlogServer configuration.
cmd/pitr/main.go	New PITR helper CLI (setup downloads relay logs; apply runs replication until target).
cmd/internal/db/db.go	Adds replication/PITR helper SQL methods for the PITR CLI.
build/run-pitr-restore.sh	New script executed by PITR Job container to run setup/apply around a local mysqld.
build/ps-init-entrypoint.sh	Installs `pitr` binary and PITR restore script into the shared `/opt/percona` volume.
build/Dockerfile	Builds and packages the new `pitr` binary into the operator image.
api/v1/perconaservermysql_types.go	Disables PITR when cluster is paused (defaulting behavior).

Comments suppressed due to low confidence (1)

pkg/binlogserver/binlog_server.go:84

StatefulSet replicas are hard-coded to 1, ignoring the user-provided spec.Size from BinlogServerSpec (PodSpec inline). This is a behavior change from using spec.Size and makes the size field effectively meaningless for this component. Either honor spec.Size (including allowing 0 to disable) or remove/ignore the field consistently at the API level.

func StatefulSet(cr *apiv1.PerconaServerMySQL, initImage, configHash string) *appsv1.StatefulSet {
	spec := cr.Spec.Backup.PiTR.BinlogServer

	labels := MatchLabels(cr)

	annotations := make(map[string]string)
	if configHash != "" {
		annotations[string(naming.AnnotationConfigHash)] = configHash
	}

	return &appsv1.StatefulSet{
		TypeMeta: metav1.TypeMeta{
			APIVersion: "apps/v1",
			Kind:       "StatefulSet",
		},
		ObjectMeta: metav1.ObjectMeta{
			Name:        Name(cr),
			Namespace:   cr.Namespace,
			Labels:      labels,
			Annotations: cr.GlobalAnnotations(),
		},
		Spec: appsv1.StatefulSetSpec{
			Replicas: ptr.To(int32(1)),
			Selector: &metav1.LabelSelector{
				MatchLabels: labels,
			},
			Template: corev1.PodTemplateSpec{
				ObjectMeta: metav1.ObjectMeta{
					Labels:      labels,
					Annotations: util.SSMapMerge(cr.GlobalAnnotations(), annotations),
				},
				Spec: spec.Core(
					labels,
					volumes(cr),

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pkg/controller/ps/controller.go

Copilot · 2026-03-22T15:45:13Z

pkg/controller/ps/controller.go

+	s3Uri := fmt.Sprintf("%s://%s:%s@%s/%s", protocol, accessKey, secretKey, host, s3.Bucket)
 	if len(s3.Prefix) > 0 {
 		s3Uri += fmt.Sprintf("/%s", s3.Prefix)


reconcileBinlogServer builds s3Uri using s3.Bucket and s3.Prefix directly. BackupStorageS3Spec.Bucket can already include a prefix (BucketWithPrefix), so this can produce an invalid URI like "...///". Use BucketAndPrefix() and join the resulting prefix once to avoid double-prefixing and to keep bucket vs key separation correct.

Suggested change

s3Uri := fmt.Sprintf("%s://%s:%s@%s/%s", protocol, accessKey, secretKey, host, s3.Bucket)

if len(s3.Prefix) > 0 {

s3Uri += fmt.Sprintf("/%s", s3.Prefix)

bucket, prefix := s3.BucketAndPrefix()

s3Uri := fmt.Sprintf("%s://%s:%s@%s/%s", protocol, accessKey, secretKey, host, bucket)

if len(prefix) > 0 {

s3Uri += fmt.Sprintf("/%s", prefix)

pkg/controller/psrestore/controller.go

Copilot · 2026-03-22T15:45:14Z

pkg/pitr/pitr.go

+	if binlogServer.Storage.S3 != nil {
+		s3 := binlogServer.Storage.S3
+		bucket, _ := s3.BucketAndPrefix()
+		envs = append(envs,
+			corev1.EnvVar{
+				Name:  "STORAGE_TYPE",
+				Value: "s3",
+			},
+			corev1.EnvVar{
+				Name: "AWS_ACCESS_KEY_ID",
+				ValueFrom: &corev1.EnvVarSource{
+					SecretKeyRef: k8s.SecretKeySelector(s3.CredentialsSecret, secret.CredentialsAWSAccessKey),
+				},
+			},
+			corev1.EnvVar{
+				Name: "AWS_SECRET_ACCESS_KEY",
+				ValueFrom: &corev1.EnvVarSource{
+					SecretKeyRef: k8s.SecretKeySelector(s3.CredentialsSecret, secret.CredentialsAWSSecretKey),
+				},
+			},
+			corev1.EnvVar{
+				Name:  "AWS_DEFAULT_REGION",
+				Value: s3.Region,
+			},
+			corev1.EnvVar{
+				Name:  "AWS_ENDPOINT",
+				Value: s3.EndpointURL,
+			},
+			corev1.EnvVar{
+				Name:  "S3_BUCKET",
+				Value: bucket,
+			},
+		)
+	}


restoreContainer() doesn’t propagate storage.VerifyTLS into the PITR job environment, but cmd/pitr defaults to VERIFY_TLS=true. This prevents disabling TLS verification for S3-compatible endpoints with custom/self-signed certs (a capability that existing backup/restore jobs support via VERIFY_TLS). Add VERIFY_TLS env based on storage.VerifyTLS (similar to xtrabackup restoreContainer).

Copilot · 2026-03-22T15:45:14Z

cmd/pitr/main.go

+// e.g. "https://minio-service:9000/binlogs/binlog.000001" -> "binlogs/binlog.000001"
+func objectKeyFromURI(uri string) (string, error) {
+	u, err := url.Parse(uri)
+	if err != nil {
+		return "", fmt.Errorf("parse URL: %w", err)
+	}
+	// Path starts with "/", trim the leading slash to get the object key
+	return strings.TrimPrefix(u.Path, "/"), nil


BinlogEntry.URI is parsed and the entire URL path (minus leading "/") is used as the S3 object key. If the URI is path-style (common for s3://host/bucket/key or https://endpoint/bucket/key), this returns "bucket/key" and will not match when the S3 client is already scoped to that bucket. Consider making objectKeyFromURI aware of the bucket (strip a leading "//" segment when present) and support both virtual-host and path-style URIs robustly.

Suggested change

// e.g. "https://minio-service:9000/binlogs/binlog.000001" -> "binlogs/binlog.000001"

func objectKeyFromURI(uri string) (string, error) {

u, err := url.Parse(uri)

if err != nil {

return "", fmt.Errorf("parse URL: %w", err)

}

// Path starts with "/", trim the leading slash to get the object key

return strings.TrimPrefix(u.Path, "/"), nil

// It supports both virtual-hosted-style and path-style S3/MinIO URLs.

// Examples:

// "https://minio-service:9000/binlogs/binlog.000001" -> "binlogs/binlog.000001"

// "https://bucket.s3.amazonaws.com/binlogs/binlog.000001" -> "binlogs/binlog.000001"

func objectKeyFromURI(uri string) (string, error) {

u, err := url.Parse(uri)

if err != nil {

return "", fmt.Errorf("parse URL: %w", err)

}

// Normalize path by trimming the leading slash.

path := strings.TrimPrefix(u.Path, "/")

if path == "" {

return "", nil

}

// Try to infer the bucket from the hostname for virtual-hosted-style URLs,

// e.g. "bucket.s3.amazonaws.com" -> bucket "bucket".

host := u.Hostname()

if host != "" {

parts := strings.Split(host, ".")

// Heuristic: if the first label is not "s3" and there is more than one label,

// treat the first label as a bucket name.

if len(parts) > 1 && parts[0] != "s3" {

bucketFromHost := parts[0]

prefix := bucketFromHost + "/"

if strings.HasPrefix(path, prefix) {

// Strip a redundant leading "<bucket>/" segment when present.

path = strings.TrimPrefix(path, prefix)

}

}

}

return path, nil

cmd/internal/db/db.go

cmd/pitr/main.go

config/crd/bases/ps.percona.com_perconaservermysqlrestores.yaml

Copilot

Pull request overview

Copilot reviewed 37 out of 37 changed files in this pull request and generated 7 comments.

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Copilot · 2026-03-23T17:02:04Z

pkg/binlogserver/binlog_server.go

 		Spec: appsv1.StatefulSetSpec{
-			Replicas: &spec.Size,
+			Replicas: ptr.To(int32(1)),
 			Selector: &metav1.LabelSelector{


StatefulSet replicas are hard-coded to 1, which ignores the configured .spec.backup.pitr.binlogServer.size (PodSpec.Size). This prevents users from scaling the binlog server and is inconsistent with other components that honor PodSpec.Size; use the spec.Size value here (and ensure it’s non-zero/defaulted) rather than forcing 1.

pkg/controller/ps/controller.go

pkg/controller/psrestore/controller.go

pkg/pitr/pitr.go

build/run-pitr-restore.sh

cmd/pitr/main.go

Copilot

Pull request overview

Copilot reviewed 77 out of 77 changed files in this pull request and generated 7 comments.

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pkg/controller/psrestore/controller.go

pkg/controller/ps/controller.go

cmd/pitr/main.go

cmd/internal/db/db.go

cmd/example-gen/pkg/defaults/values.go

gkech · 2026-04-14T11:14:17Z

we have conflicts with the e2e tests

gkech · 2026-04-14T11:17:26Z

pkg/controller/psrestore/controller.go


 	if cr.Spec.PITR != nil {
-		if !cluster.Spec.Backup.PiTR.Enabled || cluster.Spec.Backup.PiTR.BinlogServer == nil {
+		if cluster.Spec.Backup.PiTR.BinlogServer == nil {


Shouldn't we also check that the pitr is enabled? We may have the server fully configured, but have enabled set to false 🤔

Copilot

Pull request overview

Copilot reviewed 106 out of 106 changed files in this pull request and generated 2 comments.

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pkg/controller/psrestore/controller.go

github-actions · 2026-04-15T14:30:20Z

build/run-pitr-restore.sh

+  local ts=$(date +%Y-%m-%dT%H:%M:%S.%N%z --utc | sed 's/+0000/Z/g')
+  echo "${ts} 0 [Info] [K8SPS-642] [Job] $*" >&2


[shfmt] _{reported by reviewdog 🐶}

Suggested change

local ts=$(date +%Y-%m-%dT%H:%M:%S.%N%z --utc | sed 's/+0000/Z/g')

echo "${ts} 0 [Info] [K8SPS-642] [Job] $*" >&2

local ts=$(date +%Y-%m-%dT%H:%M:%S.%N%z --utc | sed 's/+0000/Z/g')

echo "${ts} 0 [Info] [K8SPS-642] [Job] $*" >&2

github-actions · 2026-04-15T14:30:20Z

build/run-pitr-restore.sh

+  --admin-address=127.0.0.1 \
+  --user=mysql \
+  --gtid-mode=ON \
+  --enforce-gtid-consistency=ON &


[shfmt] _{reported by reviewdog 🐶}

Suggested change

--admin-address=127.0.0.1 \

--user=mysql \

--gtid-mode=ON \

--enforce-gtid-consistency=ON &

--admin-address=127.0.0.1 \

--user=mysql \

--gtid-mode=ON \

--enforce-gtid-consistency=ON &

github-actions · 2026-04-15T14:30:20Z

build/run-pitr-restore.sh

+
+log "waiting for mysqld to be ready"
+until mysqladmin -u operator -p"$(</etc/mysql/mysql-users-secret/operator)" ping --silent 2>/dev/null; do
+    sleep 1;


[shfmt] _{reported by reviewdog 🐶}

Suggested change

sleep 1;

sleep 1

github-actions · 2026-04-15T14:30:20Z

build/run-pitr-restore.sh

+  SLEEP_FOREVER_FILE=/var/lib/mysql/sleep-forever
+  log "sleeping forever... remove ${SLEEP_FOREVER_FILE} to terminate."
+  touch ${SLEEP_FOREVER_FILE}
+  while [[ -f ${SLEEP_FOREVER_FILE} ]]; do
+    sleep 10
+  done
+  exit 0


[shfmt] _{reported by reviewdog 🐶}

Suggested change

SLEEP_FOREVER_FILE=/var/lib/mysql/sleep-forever

log "sleeping forever... remove ${SLEEP_FOREVER_FILE} to terminate."

touch ${SLEEP_FOREVER_FILE}

while [[ -f ${SLEEP_FOREVER_FILE} ]]; do

sleep 10

done

exit 0

SLEEP_FOREVER_FILE=/var/lib/mysql/sleep-forever

log "sleeping forever... remove ${SLEEP_FOREVER_FILE} to terminate."

touch ${SLEEP_FOREVER_FILE}

while [[ -f ${SLEEP_FOREVER_FILE} ]]; do

sleep 10

done

exit 0

github-actions · 2026-04-15T14:30:21Z

cmd/pitr/main_test.go

+			entries:  defaultEntries,
+			pitrType: "gtid",
+			pitrGTID: "uuid:1",
+			db:       &fakeDB{getGTIDExecutedResult: "uuid:1-5"},
+			applyErr: errors.New("fetch binlog binlogs/binlog.000001: download failed"),


[gofmt] _{reported by reviewdog 🐶}

Suggested change

entries: defaultEntries,

pitrType: "gtid",

pitrGTID: "uuid:1",

db: &fakeDB{getGTIDExecutedResult: "uuid:1-5"},

applyErr: errors.New("fetch binlog binlogs/binlog.000001: download failed"),

entries: defaultEntries,

pitrType: "gtid",

pitrGTID: "uuid:1",

db: &fakeDB{getGTIDExecutedResult: "uuid:1-5"},

applyErr: errors.New("fetch binlog binlogs/binlog.000001: download failed"),

Copilot

Pull request overview

Copilot reviewed 106 out of 106 changed files in this pull request and generated 7 comments.

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pkg/controller/psrestore/controller.go

api/v1/perconaservermysqlrestore_types.go

cmd/pitr/main.go

build/Dockerfile

pkg/controller/psrestore/controller.go

mayankshah1607 · 2026-04-15T15:48:32Z

cmd/pitr/main.go

+	operatorPass, err := getSecret(apiv1.UserOperator)
+	if err != nil {
+		return fmt.Errorf("get operator password: %w", err)
+	}


Why not just mount it as an env variable (from secret) in the restore job?

mayankshah1607 · 2026-04-15T16:02:35Z

api/v1/perconaservermysql_types.go

 	Orchestrator   StatefulAppStatus  `json:"orchestrator,omitempty"`
 	HAProxy        StatefulAppStatus  `json:"haproxy,omitempty"`
 	Router         StatefulAppStatus  `json:"router,omitempty"`
+	BinlogServer   StatefulAppStatus  `json:"binlogServer,omitempty"`


This is fine, but for future, let's try to add these as conditions

mayankshah1607 · 2026-04-15T16:03:56Z

api/v1/perconaservermysql_types.go

+		if bls.SSLMode == "" {
+			bls.SSLMode = "verify_identity"
+		}
+		if bls.VerifyChecksum == nil {
+			t := true
+			bls.VerifyChecksum = &t
+		}
+		if bls.RewriteFileSize == "" {
+			bls.RewriteFileSize = "128M"
+		}
+		if bls.CheckpointSize == "" {
+			bls.CheckpointSize = "16M"
+		}
+		if bls.CheckpointInterval == "" {
+			bls.CheckpointInterval = "30s"
+		}
+		if bls.ConnectTimeout == 0 {
+			bls.ConnectTimeout = 30
+		}
+		if bls.ReadTimeout == 0 {
+			bls.ReadTimeout = 30
+		}
+		if bls.WriteTimeout == 0 {
+			bls.WriteTimeout = 30
+		}
+		if bls.IdleTime == 0 {
+			bls.IdleTime = 30
+		}


Lets set defaults on CRD also

egegunes added 17 commits March 22, 2026 18:34

fix binlog server deployment

8c2aa9d

remove embedded fields

1496ff3

add exec search functions

925659c

add pitr pkg

634a30d

run pitr job

6e76ed0

pass binlog list to pitr job

b0795ec

add pitr entrypoint

aeb61df

clean up binlog server if cluster is paused

2930942

implement pitr cli

35558b4

fix s3 uri

de34a01

fix pitr job

8b38964

fix apply phase

0712c3a

allow protocol in endpoint url

eb3219c

don't run reset

2e9433d

fix admin connections

cd39d9e

update manifests

031f250

add binlog server to cr

b7d0b94

egegunes added this to the v1.1.0 milestone Mar 22, 2026

Copilot AI review requested due to automatic review settings March 22, 2026 15:37

pull-request-size bot added the size/XXL 1000+ lines label Mar 22, 2026

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gkech and others added 2 commits March 23, 2026 17:33

add e2e test and fix status starting state

0a6773c

fix test issues

7cc8a91

Copilot AI review requested due to automatic review settings March 23, 2026 16:56

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fix one more issue

e5d30c0

Copilot AI reviewed Mar 23, 2026

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egegunes and others added 2 commits March 24, 2026 15:58

fix type=date

7bd1bcf

strip the leading bucket_name to get the object key

30aa87c

use new image for PBS

ecb632a

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fix

b7997fc

gkech reviewed Apr 14, 2026

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egegunes added 8 commits April 14, 2026 14:35

check for pitr enabled before restore

2a10e7b

remove unused code

c59fb23

fix default value

11d251d

use MYSQL_PWD env var

bcf6607

improve parseEndpointUrl

32d7307

apply binlogs on the fly

0fddd84

log Close and Wait errors

aaf2e86

add async test

4d42333

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pkg/controller/psrestore/controller.go Show resolved Hide resolved

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egegunes added 4 commits April 15, 2026 14:41

use mysql log format for pitr

86ee68b

use --force to apply binlogs

180f8da

Merge branch 'main' into K8SPS-642

6bccf91

fix async test

1631578

Copilot AI review requested due to automatic review settings April 15, 2026 14:30

egegunes force-pushed the K8SPS-642 branch from 8ca650c to 1631578 Compare April 15, 2026 14:30

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Merge branch 'main' into K8SPS-642

4d8b484

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mayankshah1607 reviewed Apr 15, 2026

View reviewed changes

-	s3Uri := fmt.Sprintf("%s://%s:%s@%s/%s", protocol, accessKey, secretKey, host, s3.Bucket)
-	if len(s3.Prefix) > 0 {
-		s3Uri += fmt.Sprintf("/%s", s3.Prefix)
+	bucket, prefix := s3.BucketAndPrefix()
+	s3Uri := fmt.Sprintf("%s://%s:%s@%s/%s", protocol, accessKey, secretKey, host, bucket)
+	if len(prefix) > 0 {
+		s3Uri += fmt.Sprintf("/%s", prefix)

-// e.g. "https://minio-service:9000/binlogs/binlog.000001" -> "binlogs/binlog.000001"
-func objectKeyFromURI(uri string) (string, error) {
-	u, err := url.Parse(uri)
-	if err != nil {
-		return "", fmt.Errorf("parse URL: %w", err)
-	}
-	// Path starts with "/", trim the leading slash to get the object key
-	return strings.TrimPrefix(u.Path, "/"), nil
+// It supports both virtual-hosted-style and path-style S3/MinIO URLs.
+// Examples:
+//   "https://minio-service:9000/binlogs/binlog.000001"      -> "binlogs/binlog.000001"
+//   "https://bucket.s3.amazonaws.com/binlogs/binlog.000001" -> "binlogs/binlog.000001"
+func objectKeyFromURI(uri string) (string, error) {
+	u, err := url.Parse(uri)
+	if err != nil {
+		return "", fmt.Errorf("parse URL: %w", err)
+	}
+	// Normalize path by trimming the leading slash.
+	path := strings.TrimPrefix(u.Path, "/")
+	if path == "" {
+		return "", nil
+	}
+	// Try to infer the bucket from the hostname for virtual-hosted-style URLs,
+	// e.g. "bucket.s3.amazonaws.com" -> bucket "bucket".
+	host := u.Hostname()
+	if host != "" {
+		parts := strings.Split(host, ".")
+		// Heuristic: if the first label is not "s3" and there is more than one label,
+		// treat the first label as a bucket name.
+		if len(parts) > 1 && parts[0] != "s3" {
+			bucketFromHost := parts[0]
+			prefix := bucketFromHost + "/"
+			if strings.HasPrefix(path, prefix) {
+				// Strip a redundant leading "<bucket>/" segment when present.
+				path = strings.TrimPrefix(path, prefix)
+			}
+		}
+	}
+	return path, nil

		local ts=$(date +%Y-%m-%dT%H:%M:%S.%N%z --utc \| sed 's/+0000/Z/g')
		echo "${ts} 0 [Info] [K8SPS-642] [Job] $*" >&2

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egegunes commented Mar 22, 2026 • edited by gkech Loading Uh oh! There was an error while loading. Please reload this page.

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CHANGE DESCRIPTION

CHECKLIST

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Pull request overview

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egegunes commented Mar 22, 2026 •

edited by gkech

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