Enable progress bars in non-interactive mode for SLURM clusters #76
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Configure pbapply to display text-based progress bars when running in non-interactive mode (e.g., batch jobs, Rscript). Previously, progress tracking was disabled in non-interactive sessions, making it impossible to monitor simulation progress in SLURM log files. Changes: - R/analysis.R: Add pboptions configuration to force type="txt" in non-interactive mode while preserving timer bars in interactive sessions - R/runSimulation.R: Update progress parameter documentation to describe the new behavior Interactive users see no change. Non-interactive users (SLURM, batch jobs) now see text progress bars when monitoring logs via tail -f. Fixes philchalmers#75
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Could you separate these two pull requests? The ladder commit doesn't quite fit with what I'm thinking should be done. |
philchalmers
approved these changes
Dec 14, 2025
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Configure pbapply to display text-based progress bars when running
in non-interactive mode (e.g., batch jobs, Rscript). Previously,
progress tracking was disabled in non-interactive sessions, making
it impossible to monitor simulation progress in SLURM log files.
Changes:
in non-interactive mode while preserving timer bars in interactive
sessions
describe the new behavior
Interactive users see no change. Non-interactive users (SLURM, batch
jobs) now see text progress bars when monitoring logs via tail -f.
Fixes #75