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1. agentic-spliceai agentic-spliceai Public

   Context-aware novel isoform discovery through multimodal evidence fusion and agentic AI validation for precision medicine

   Python 1

2. genai-lab genai-lab Public

   Generative AI for Computational Biology: R&D for foundation models and generative methods toward accelerating drug discovery, understanding treatment responses, and enabling in silico biological ex…

   Jupyter Notebook

3. causal-bio-lab causal-bio-lab Public

   Causal ML for drug discovery: treatment effect estimation, causal graphs, propensity score methods, and perturbation response prediction.

   Jupyter Notebook

4. llm-lab llm-lab Public

   A research sandbox for LLM pretraining, fine-tuning (SFT, DPO, RLHF), and alignment techniques. Designed for developing LLM-based solutions in computational biology.

   Python

5. GRL GRL Public

   A generalized reinforcement learning framework for structured action representations and adaptive decision-making in evolving systems.

   Jupyter Notebook

6. ehr-sequencing ehr-sequencing Public

   A research framework for longitudinal EHR sequence modeling, exploring multiple temporal representations, learning objectives, and model classes for disease progression, survival analysis, and temp…

   Python