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rendu ISAURE BEAUDREY #5

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75 changes: 68 additions & 7 deletions BINF2025_TP4.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -3,9 +3,7 @@
"nbformat_minor": 0,
"metadata": {
"colab": {
"provenance": [],
"authorship_tag": "ABX9TyOkaYHMV5kAI2JXjqDKbiVa",
"include_colab_link": true
"provenance": []
},
"kernelspec": {
"name": "python3",
Expand All @@ -19,8 +17,7 @@
{
"cell_type": "markdown",
"metadata": {
"id": "view-in-github",
"colab_type": "text"
"id": "view-in-github"
},
"source": [
"<a href=\"https://colab.research.google.com/github/pparutto/BINF2025_TP4/blob/main/BINF2025_TP4.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
Expand Down Expand Up @@ -184,14 +181,50 @@
{
"cell_type": "code",
"source": [
"#Votre code ici"
"def mark_columns(A: list, alpha: float) -> list :\n",
" n = len(A[0])\n",
" colomns_mark = []\n",
" for i in range(n):\n",
" cpt_trou = 0\n",
" for j in range(len(A)):\n",
" if A[j][i] == '-':\n",
" cpt_trou += 1\n",
" if cpt_trou < alpha:\n",
" colomns_mark.append(i)\n",
" return colomns_mark"
],
"metadata": {
"id": "ikf5pcUtRYvV"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "code",
"source": [
"A = ['AT-G', 'AATC', 'ACAG']\n",
"alpha = 1\n",
"\n",
"print(mark_columns(A, alpha))"
],
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "8YO0PjTgH5dV",
"outputId": "903e5627-fca4-4743-fe05-375c59d8ef6e"
},
"execution_count": null,
"outputs": [
{
"output_type": "stream",
"name": "stdout",
"text": [
"[0, 1, 3]\n"
]
}
]
},
{
"cell_type": "markdown",
"source": [
Expand Down Expand Up @@ -230,6 +263,34 @@
"execution_count": null,
"outputs": []
},
{
"cell_type": "code",
"source": [
"def createT(A: list, alpha: float):\n",
" N = mark_columns(A, alpha)\n",
" T = [[1 for _ in range((N + 1) * 9)] for _ in range((N + 1) * 9)]\n",
" for i in range((N + 1) * 9):\n",
" T[i][0] = 0\n",
" if i % 3 == 0:\n",
" T[i][((N + 1) * 9) - 1] = 0\n",
" return T\n",
"\n",
"def createeM(A: list, alpha: float):\n",
" N = mark_columns(A, alpha)\n",
" eM = [[1 for _ in range((N + 1) * 20)] for _ in range((N + 1) * 20)]\n",
" for i in range((N + 1) * 9):\n",
" eM[0][i] = 0\n",
"\n",
"def createeI(A: list, alpha: float):\n",
" N = mark_columns(A, alpha)\n",
" eI = [[1 for _ in range((N + 1) * 20)] for _ in range((N + 1) * 20)]"
],
"metadata": {
"id": "NVcQQChMMpl-"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "markdown",
"source": [
Expand Down Expand Up @@ -344,4 +405,4 @@
"outputs": []
}
]
}
}