Migrate/internal merge - #8

Merged

f-utro merged 38 commits into

mainfrom

migrate/internal-merge

Sep 3, 2026

Commits on Aug 28, 2026

Phase 1: fix train/test contamination, embedding crashes, and PQK cache reuse

Aritra Bose
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claude
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e13ccba
Phase 2: packaging and dependency hygiene

Aritra Bose
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135bd21
Phase 3: port the QuVINE app behind an optional [quvine] extra

Aritra Bose
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claude
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a82144c
Phase 4: make QuVINE a first-class embedding
Aritra Bose
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14acb42
Recover the QuVINE data subpackage that was never committed
Aritra Bose
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7164775

Commits on Aug 29, 2026

Phase 5: error messages, exception handling, boundary validation
Aritra Bose
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de056b7
Phase 6: plotting hygiene
Aritra Bose
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30ff96a
Phase 7: notebooks, tutorial fixtures, and a single fixture resolver

Aritra Bose
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claude
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88df35b
Phase 8: fix the Sphinx build, publish the site from CI, document the extras
Aritra Bose
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336f7f2
Phase 9: an integration test tier, and the defects it found

Aritra Bose
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c986d93
Phase 10: prove the extra is optional in CI, and drop the stale lock file

Aritra Bose
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36312ff
docs: fix seven defects a real Sphinx build exposed, and guard them

Aritra Bose
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94f9e4e
Seed the estimators too, not just the split
Aritra Bose
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f3ca626

Commits on Aug 30, 2026

Make a broken import fail the suite instead of switching it off
Aritra Bose
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9cb74a1
Two defects that made the QProfiler tutorial unrunnable
Aritra Bose
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1b1010d
Make the docs build warning-free, and make a warning fail it
Aritra Bose
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420d12c

Commits on Aug 31, 2026

Make the built distributions depend on the commit, not the builder

Aritra Bose
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2fccf9c
Let QSage read its own documented input, and be predicted from

Aritra Bose
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78582a4
Validate the QProfiler config before logging from it

Aritra Bose
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f8a1e75
Execute the QuVINE T-vs-monocyte tutorial

Aritra Bose
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4e82a68
Stop a stale SOURCES.txt from shipping 231 untracked files

Aritra Bose
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d228342
Stop torch's OpenMP runtime from segfaulting every XGBoost fit

Aritra Bose
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20f5993
Let grid search tune a subset of a model's hyperparameters

Aritra Bose
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08aec59
Make the QPL tutorial runnable, and its conclusions real

Aritra Bose
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cdb1d30
Execute the QuVINE CD4-vs-CD8 tutorial, and drop a false xfail reason

Aritra Bose
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c19b5ac
Execute the 2x2 quadrant tutorial end to end

Aritra Bose
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8580bea
Make example_qprofiler.ipynb runnable and unify its two config copies

Aritra Bose
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5f442e4
Restore the inline figures stripped by MPLBACKEND=Agg

Aritra Bose
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2282d2f
Fix the PQK data map, which could not build any feature map

Aritra Bose
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08e67ad
Complete the Quantum Ensemble tutorial, and make its XGBoost arm run

Aritra Bose
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89cfc1e
Stop labelling an empirical score gap "quantum advantage" in the tutorials

Aritra Bose
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ffb25bb
PQK - OV: report F1 instead of accuracy, and fix a mangled separator

Aritra Bose
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e527328
PQK - OV: stop refitting 1,260 duplicate models in the SVM grid

Aritra Bose
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e2a7b12

Commits on Sep 1, 2026

Commit executed PQK - OV outputs; ignore its run artifacts
Aritra Bose
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751663e

Commits on Sep 3, 2026

Stop example_quvine.ipynb from segfaulting its own kernel
Aritra Bose
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094bd5f
Stop a stale dir_home from shadowing the caller's own checkout
Aritra Bose
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065661e
Scrub absolute local paths out of committed notebook outputs
Aritra Bose
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c23bd28
docs: publish the two remaining QuVINE tutorials

Aritra Bose
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1c0768d