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Marius1311 merged 1 commit into from
Apr 30, 2026
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[codex] Add review guide pointer #79

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6 changes: 6 additions & 0 deletions AGENTS.md
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Expand Up @@ -29,6 +29,12 @@ Every fact should have one owner. This file owns invariants and the reference ta
| Provider wiring (OpenAI / Anthropic / Gemini) | `src/cell_annotator/model/_providers.py`, `llm_interface.py`, `base_annotator.py` |
| Release notes | GitHub Releases (<https://github.com/quadbio/cell-annotator/releases>) |

## Review Guidelines

For GitHub PR reviews, use `REVIEW_GUIDE.md` as the canonical review workflow and
source of review-specific risk areas, testing checks, and documentation-impact checks.
This file only owns the project invariants and source-of-truth map below.

## Critical Invariants

- **Data privacy.** Only cluster marker gene *names*, plus `species`, `tissue`, and (optionally) `stage`, are sent to LLM providers. Raw expression values, cell-level data, and user metadata must never cross the provider boundary. Any PR that broadens what is sent is a hard red flag.
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