new article

applied-insights/case-studies/posts/2026/07/28/README.txt

@@ -0,0 +1,22 @@
+RWDS article — drop-in package
+==============================
+
+FILES
+  report.qmd        Main Quarto source (local image references)
+  references.bib    24 references, keyed @ref1..@ref24
+  images/           10 PNGs (header + Figures 1-4)
+
+TO RENDER
+  1. Copy report.qmd, references.bib and images/ into your cloned copy of the
+     RWDS template repo (the one that already contains rwds.scss, rwds.css and
+     chicago.csl).
+  2. From that folder:  quarto render report.qmd
+     (or: quarto preview report.qmd)
+
+CITATION STYLE — IMPORTANT
+  The YAML uses  csl: chicago.csl  (ships with the template = Chicago author-date).
+  That renders your citations as (Author Year) and alphabetises the reference list.
+  Your article was written in NUMBERED Vancouver style. To keep [1]..[24]:
+    - download vancouver.csl from https://github.com/citation-style-language/styles
+    - place it next to report.qmd
+    - in report.qmd swap:   csl: chicago.csl   ->   csl: vancouver.csl

applied-insights/case-studies/posts/2026/07/28/references.bib

@@ -0,0 +1,231 @@
+@article{ref1,
+  author  = {Shively, S. and Scher, A. I. and Perl, D. P. and Diaz-Arrastia, R.},
+  title   = {Dementia resulting from traumatic brain injury: what is the pathology?},
+  journal = {Archives of Neurology},
+  year    = {2012},
+  volume  = {69},
+  number  = {10},
+  pages   = {1245--1251}
+}
+
+@article{ref2,
+  author  = {Lee, Y.-K. and Chen, Y.-Y. and Huang, H.-C. and others},
+  title   = {Increased risk of dementia in patients with mild traumatic brain injury: a nationwide cohort study},
+  journal = {PLoS One},
+  year    = {2013},
+  volume  = {8},
+  number  = {5},
+  pages   = {e62422}
+}
+
+@article{ref3,
+  author  = {Nordstr{\"o}m, A. and Nordstr{\"o}m, P.},
+  title   = {Traumatic brain injury and the risk of dementia diagnosis: a nationwide cohort study},
+  journal = {PLoS Medicine},
+  year    = {2018},
+  volume  = {15},
+  number  = {1},
+  pages   = {e1002496}
+}
+
+@article{ref4,
+  author  = {Maas, A. I. R. and Menon, D. K. and Adelson, P. D. and others},
+  title   = {Traumatic brain injury: integrated approaches to improve prevention, clinical care, and research},
+  journal = {The Lancet Neurology},
+  year    = {2017},
+  volume  = {16},
+  number  = {12},
+  pages   = {987--1048}
+}
+
+@article{ref5,
+  author  = {Huie, J. R. and Yue, J. K. and Diaz-Arrastia, R. and others},
+  title   = {Biomarkers for traumatic brain injury: data standards and statistical considerations},
+  journal = {Journal of Neurotrauma},
+  year    = {2021},
+  volume  = {38},
+  number  = {18},
+  pages   = {2514--2529}
+}
+
+@article{ref6,
+  author  = {Chou, A. and Mayer, A. R. and Bauer, R. M. and others},
+  title   = {Empowering data sharing and analytics through the Open Data Commons for Traumatic Brain Injury Research},
+  journal = {Neurotrauma Reports},
+  year    = {2022},
+  volume  = {3},
+  number  = {1},
+  pages   = {139--157}
+}
+
+@article{ref7,
+  author  = {Gorgolewski, K. J. and Auer, T. and Calhoun, V. D. and others},
+  title   = {The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments},
+  journal = {Scientific Data},
+  year    = {2016},
+  volume  = {3},
+  pages   = {160044}
+}
+
+@article{ref8,
+  author  = {Fortin, J.-P. and Cullen, N. and Sheline, Y. I. and others},
+  title   = {Harmonization of cortical thickness measurements across scanners and sites},
+  journal = {NeuroImage},
+  year    = {2018},
+  volume  = {167},
+  pages   = {104--120}
+}
+
+@misc{ref9,
+  author       = {{Observational Health Data Sciences and Informatics (OHDSI)}},
+  title        = {The OMOP Common Data Model, version 5.1},
+  year         = {2017},
+  howpublished = {\url{https://ohdsi.github.io/CommonDataModel/}},
+  note         = {Available from: \url{https://ohdsi.github.io/CommonDataModel/}}
+}
+
+@article{ref10,
+  author  = {Bauermeister, S. and Orton, C. and Thompson, S. and others},
+  title   = {The Dementias Platform UK (DPUK) Data Portal},
+  journal = {European Journal of Epidemiology},
+  year    = {2020},
+  volume  = {35},
+  number  = {6},
+  pages   = {601--611}
+}
+
+@techreport{ref11,
+  author      = {{UK Health Data Research Alliance}},
+  title       = {Trusted Research Environments (TREs): A strategy to build public trust and enable secure data access for research},
+  institution = {HDR UK},
+  address     = {London},
+  year        = {2021}
+}
+
+@article{ref12,
+  author  = {Jandoubi, B. and Akhloufi, M. A.},
+  title   = {Multimodal artificial intelligence in medical diagnostics},
+  journal = {Information},
+  year    = {2025},
+  volume  = {16},
+  number  = {7},
+  pages   = {591}
+}
+
+@article{ref13,
+  author  = {Carvalho, D. V. and Pereira, E. M. and Cardoso, J. S.},
+  title   = {Machine learning interpretability: a survey on methods and metrics},
+  journal = {Electronics},
+  year    = {2019},
+  volume  = {8},
+  number  = {8},
+  pages   = {832}
+}
+
+@article{ref14,
+  author  = {Sadeghi, Z. and McDermott, M. B. A. and Ghassemi, M. and others},
+  title   = {A review of explainable artificial intelligence in healthcare},
+  journal = {Computers and Electrical Engineering},
+  year    = {2024},
+  volume  = {118},
+  pages   = {109370}
+}
+
+@inproceedings{ref15,
+  author    = {Lundberg, S. M. and Lee, S.-I.},
+  title     = {A unified approach to interpreting model predictions},
+  booktitle = {Advances in Neural Information Processing Systems 30 (NeurIPS 2017)},
+  year      = {2017},
+  pages     = {4765--4774}
+}
+
+@article{ref16,
+  author  = {Liu, W. and Yu, X. and Chen, J. and Chen, W. and Wu, Q.},
+  title   = {Explainable machine learning for early prediction of sepsis in traumatic brain injury: a discovery and validation study},
+  journal = {PLoS One},
+  year    = {2024},
+  volume  = {19},
+  number  = {11},
+  pages   = {e0313132}
+}
+
+@article{ref17,
+  author  = {Nyam, T.-T. E. and Ng, H.-J. and Lee, J. Y. and others},
+  title   = {Predictive modeling of long-term care needs in traumatic brain injury patients using machine learning},
+  journal = {Diagnostics (Basel)},
+  year    = {2025},
+  volume  = {15},
+  number  = {1},
+  pages   = {20}
+}
+
+@article{ref18,
+  author  = {Mitchell, J. E. and McDonald, S. J. and Sharp, D. J. and others},
+  title   = {The normative modelling framework for traumatic brain injury},
+  journal = {Brain},
+  year    = {2025},
+  volume  = {148},
+  number  = {11},
+  pages   = {3817--3832}
+}
+
+@article{ref19,
+  author  = {Mansouri-Benssassi, E. and Rogers, S. and Reel, S. and Malone, M. and Smith, J. and Ritchie, F. and Jefferson, E.},
+  title   = {Disclosure control of machine learning models from trusted research environments (TRE): new challenges and opportunities},
+  journal = {Heliyon},
+  year    = {2023},
+  volume  = {9},
+  number  = {4},
+  pages   = {e15143}
+}
+
+@article{ref20,
+  author  = {Fann, J. R. and Ribe, A. R. and Pedersen, H. S. and Fenger-Gr{\o}n, M. and Christensen, J. and Benros, M. E. and Vestergaard, M. and S{\o}rensen, H. T.},
+  title   = {Long-term risk of dementia among people with traumatic brain injury in Denmark: a population-based observational cohort study},
+  journal = {The Lancet Psychiatry},
+  year    = {2018},
+  volume  = {5},
+  number  = {5},
+  pages   = {424--431}
+}
+
+@article{ref21,
+  author  = {Graham, N. S. N. and Sharp, D. J.},
+  title   = {Understanding neurodegeneration after traumatic brain injury: from mechanisms to clinical trials in dementia},
+  journal = {Journal of Neurology, Neurosurgery \& Psychiatry},
+  year    = {2019},
+  volume  = {90},
+  number  = {11},
+  pages   = {1221--1233}
+}
+
+@article{ref22,
+  author  = {Torabi, F. and Squires, E. and Orton, C. and Heys, S. and Ford, D. and Lyons, R. A. and Thompson, S.},
+  title   = {A common framework for health data governance standards},
+  journal = {Nature Medicine},
+  year    = {2024},
+  volume  = {30},
+  number  = {1},
+  pages   = {26--29},
+  doi     = {10.1038/s41591-023-02686-w}
+}
+
+@article{ref23,
+  author  = {Goncalves, A. and Ray, P. and Soper, B. and Stevens, J. and Coyle, L. and Sales, A. P.},
+  title   = {Generation and evaluation of synthetic patient data},
+  journal = {BMC Medical Research Methodology},
+  year    = {2020},
+  volume  = {20},
+  number  = {1},
+  pages   = {108}
+}
+
+@article{ref24,
+  author  = {Dankar, F. K. and Ibrahim, M. and Ismaila, N.},
+  title   = {A multi-dimensional evaluation of synthetic health data},
+  journal = {BMC Medical Informatics and Decision Making},
+  year    = {2022},
+  volume  = {22},
+  number  = {1},
+  pages   = {182}
+}