Generic information#20
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That’s awesome, FabiBur! Where can we find your thesis? I’d be very interested to having a look!
Cheers,
Roeland
Prof. dr. R.M.H. (Roeland) Merks
Professor of Mathematical Biology & Director of the Lorentz Center, Leiden
Mathematical Institute and Institute of Biology Leiden
Universiteit Leiden
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Op 7 nov. 2024, om 12:41 heeft FabiBur ***@***.***> het volgende geschreven:
Adds the possibility to add generic, model-specific information to the CellBase. A detailed description of this addition can be found in my thesis.
Additionally, changes were made to prevent the Transporter values from becoming NAN.
…________________________________
You can view, comment on, or merge this pull request online at:
#20
Commit Summary
* 036d4f8<036d4f8> Copied old/original version of auxingrowth.cpp
* 795dceb<795dceb> Added Vein Growth Model and new XML files
* 11e7c19<11e7c19> Different (probably not correct/lacking) implementations for delta_A calculation
* de9f528<de9f528> Reset area calculation and added wall stiffness manipulation
* d1d61df<d1d61df> Fixed error (bulges) on cell division
* 814fba8<814fba8> Added direction growth and fixed nchem
* c0efa12<c0efa12> Commited pro.user
* 3008cc4<3008cc4> Corrected setting of chemicals for growth direction
* 3725d2e<3725d2e> Added error for invalid neighour count and additional leaves
* 800b7ad<800b7ad> Resolved merge conflicts
* 2f115e3<2f115e3> Merge branch 'merging-branch' into fabian-veins
* 19c6b44<19c6b44> Renamed model plugin
* 4ccfe3d<4ccfe3d> Added cell differentiation, fixed growth direction setting, adapted pin inheritance
* 16d75fc<16d75fc> Added growth direction variable in cellbase and made it printable
* 934bb8d<934bb8d> Intoduced generic object plugin info in cellbase and implemented it in veingrowth
* e476ba4<e476ba4> Implemented generic output of plugin info in xml
* 30a0ec2<30a0ec2> Resolved error with nan transporters
* 777f9bd<777f9bd> Further code cosmetics
* 5ea268b<5ea268b> Passing pointer reference when getting target cell
* 4806a27<4806a27> Added Procambium Division Behaviour
* c190d3b<c190d3b> Deleted and modified files for merge
* 3ecb05c<3ecb05c> Re-added necessary files for merge
* ace7682<ace7682> Modified files for merge
File Changes
(15 files<https://github.com/rmerks/VirtualLeaf2021/pull/20/files>)
* M .gitignore<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-bc37d034bad564583790a46f19d807abfe519c5671395fd494d8cce506c42947> (4)
* M src/GUI/mesh.cpp<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-6e5445b00ab3c41314636f4ec85f5dabe749a50edfe222eb6d368de23a319dec> (43)
* M src/GUI/mesh.h<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-aa9077a80ddcea144e17d31394c2542bc999c8bf9076e43c5b86be4a999ae007> (1)
* M src/GUI/qtxmlwrite.cpp<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-dbc155012f93611d727c666d1043a5084bce04a68163b000fc58ea7ae9c7b1cf> (11)
* M src/Library/Library.pro<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-8b655bbcfce8dd40e4935402d788e684a6c6104cc8976b75c687cd82a1743e1f> (2)
* M src/Library/cellbase.h<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-b6cdfd1508829259363d57c7092f353f1933dac95e8c0f3ff82eadc2ed820478> (19)
* A src/Library/plugincellextension.cpp<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-06198b0e4d02299ceb5ddff2d9991dd84dce262868cc2482b0d7aed6a91a3f52> (6)
* A src/Library/plugincellextension.h<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-49da0b40ce907b612ea3a9184aa31a38a474f7a3866620ae70443c4e840fb9c6> (16)
* M src/Library/wallbase.h<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-0510964219772661130697f894083e57b972466230850b37b27b430f4b3e8a92> (20)
* M src/Library/wallelementinfo.cpp<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-7120e44fb52abcd0807ac18a52890624071ba8d566ac0325a74dbae15b6beaca> (4)
* M src/Library/wallelementinfo.h<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-ac8c0934209dd4e3120244abad4cf5b6ec53cdcb375cd47620efca4161632f17> (3)
* M src/Models/AuxinGrowth/auxingrowth.cpp<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-59fb603aca5c8d81c808ab7974e93a0a863a5ce7e16aed0a40c38b164527380c> (0)
* M src/Models/AuxinGrowth/auxingrowth.h<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-aad06b0d90fd5668e6ee986add4f32c1cb41706f528f635fe928dea1196f7862> (0)
* M src/Models/Models.pro<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-3bccd1adaca3728ee2c38de8367219ab36986f0b76d41b6e6a9fa40eeb3c101c> (2)
* M src/python/svg_to_vl/cellmodel.py<https://github.com/rmerks/VirtualLeaf2021/pull/20/files#diff-0ce1dffd11190e26a9961287d3e04328e980ce874929f35b08ec048c4ca0ccb5> (109)
Patch Links:
* https://github.com/rmerks/VirtualLeaf2021/pull/20.patch
* https://github.com/rmerks/VirtualLeaf2021/pull/20.diff
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Adds the possibility to add generic, model-specific information to the CellBase. A detailed description of this addition can be found in my thesis.
Additionally, changes were made to prevent the Transporter values from becoming NAN.