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ubuntu base update, Blast+ update, Soundex #3

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ubuntu base update, Blast+ update, Soundex #3

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7 changes: 5 additions & 2 deletions dockerfiles/nf-repeatmasking/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM ubuntu:14.04
FROM ubuntu:16.04

MAINTAINER Rob Syme <rob.syme@gmail.com>

Expand Down Expand Up @@ -39,7 +39,7 @@ RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/rmblast/2.2.28/ncbi-rmblas
rm -rf ncbi-rmblastn

# Install Blast+
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-x64-linux.tar.gz && \
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz && \
tar -xzvf ncbi-blast* && \
find ncbi-blast* -type f -executable -exec mv {} bin \; && \
rm -rf ncbi-blast*
Expand Down Expand Up @@ -125,6 +125,9 @@ RUN apt-get install -qqy genometools bioperl
# Install Aragon
RUN apt-get install -qqy aragorn

# This needs to be done in order for RepeatMasker to run
RUN cpan Text::Soundex

# I can't bundle the girinst RepBase libraries with the docker image,
# so you'll need to get them yourself. Download them from
# http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/RepBaseRepeatMaskerEdition-20170127.tar.gz
Expand Down