Draft
Integrate --config workflow into mea_pipeline_gui.py + fix fixed_y propagation#135
Conversation
Co-authored-by: mandarmp <33731455+mandarmp@users.noreply.github.com>
Copilot
AI
changed the title
[WIP] Integrate Shruti IPNANALYSIS GUI with config style run
Integrate --config workflow into mea_pipeline_gui.py
Mar 2, 2026
…om main) Co-authored-by: mandarmp <33731455+mandarmp@users.noreply.github.com>
Copilot
AI
changed the title
Integrate --config workflow into mea_pipeline_gui.py
Integrate --config workflow into mea_pipeline_gui.py + fix fixed_y propagation
Mar 3, 2026
dc5cdb3 to
68c7544
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
The GUI had no support for the
--configJSON workflow, requiring users to pass all settings as CLI flags. Additionally,generate_reports()was missingfixed_yin its signature, causing aTypeErrorat runtime.GUI: CONFIG FILE section
output_dir,checkpoint_dir,sorter,docker_image,reference_file,export_to_phy,clean_up,no_curation,fixed_yconfig_loader.py's schema--config <path>injected into the generated command when set; CLI flag overrides are preservedBug fix: fixed_y propagation through generate_reports()
generate_reports()accepted nofixed_yparam but callers passedfixed_y=fixed_y, causing a crash:Minor
fixed_ycheckbox entry in OPTIONS listOriginal prompt
🔒 GitHub Advanced Security automatically protects Copilot coding agent pull requests. You can protect all pull requests by enabling Advanced Security for your repositories. Learn more about Advanced Security.