Skip to content
View rpomponio's full-sized avatar

Block or report rpomponio

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
rpomponio/README.md

Ray Pomponio

Data scientist with a background in biostatistics, healthcare research, and open-source software development. I build analytical pipelines and statistical tools for complex, multi-site data problems in clinical and neuroimaging contexts.

I am the creator and maintainer of neuroHarmonize, a Python toolkit for harmonizing neuroimaging datasets across scanners and sites using ComBat-based methods. The package has been adopted by hundreds of researchers worldwide and has accumulated 500+ citations. Selected publications that use or extend this work:

Most recently, I've been a data scientist at the University of Pittsburgh / Children's Hospital of Pittsburgh, where I served as lead biostatistician for a CDC-sponsored surveillance study tracking respiratory viruses in pediatric populations. Before that, I completed my MS in Biostatistics at the University of Colorado–Denver, co-authoring 10+ manuscripts and developing statistical methods for clinical and epidemiological research across pulmonary, transplant, and critical care medicine.

Earlier in my career, I was a data analyst at the University of Pennsylvania School of Medicine, working in the Davatzikos Lab on multi-center MRI harmonization and ML-based biomarkers of neurodegeneration. That work on ComBat harmonization for neuroimaging became neuroHarmonize.

Full publication list: ncbi.nlm.nih.gov/myncbi/raymond.pomponio.1


Highlighted Publications

Neuroimaging & Harmonization

Title Journal Year
Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan NeuroImage 2020
MRI signatures of brain age and disease over the lifespan based on a deep brain network and 14,468 individuals worldwide Brain 2020
Two distinct neuroanatomical subtypes of schizophrenia revealed using machine learning Brain 2020
The Brain Chart of Aging: machine-learning analytics reveals links between brain aging, white matter disease, amyloid burden, and cognition Alzheimer's & Dementia 2021
Association of intensive vs standard blood pressure control with MRI biomarkers of Alzheimer disease JAMA Neurology 2021
Harmonizing functional connectivity reduces scanner effects in community detection NeuroImage 2022
Disentangling Alzheimer's disease neurodegeneration from typical brain ageing using machine learning Brain Communications 2022
Brain age and Alzheimer's-like atrophy are domain-specific predictors of cognitive impairment in Parkinson's disease Neurobiology of Aging 2022
Mid-life epigenetic age, neuroimaging brain age, and cognitive function: the CARDIA study Aging 2022

Clinical & Epidemiological Research

Title Journal Year
Emergence and epidemiology of dominant variants of human metapneumovirus in the United States, 2016–2021 mBio 2026
Phosphatidylethanol measures in patients with severe COVID-19-associated respiratory failure identify a subset with alcohol misuse Alcohol Clin Exp Res 2025
Donor derived cell free DNA in lung transplant recipients rises in setting of allograft instability Frontiers in Transplantation 2024
Analgesia and sedation use during noninvasive ventilation for acute respiratory failure Critical Care Medicine 2024
Extraneous load, patient census, and patient acuity correlate with cognitive load during ICU rounds Chest 2024
Prevalence of alcohol use characterized by phosphatidylethanol in patients with respiratory failure before and during the COVID-19 pandemic CHEST Critical Care 2024
Health at Home: investigating low-income housing quality on Colfax Avenue J Health Care Poor Underserved 2024
Impact of the COVID-19 pandemic on chronic disease management in patients with pulmonary hypertension Pulmonary Circulation 2023

Pinned Loading

  1. neuroHarmonize neuroHarmonize Public

    Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images. Complements the work in Ne…

    Python 121 36

  2. CIDA-CSPH/CIDAtools CIDA-CSPH/CIDAtools Public

    Project and coding tools for the Center for Innovative Design and Analysis (CIDA)

    R 11 6

  3. neuro_lifespan_trajectories neuro_lifespan_trajectories Public archive

    Interactive visualization of volumetric-age trends for anatomical brain regions.

    R 3

  4. gam_visualization gam_visualization Public archive

    An interactive visualization of Brain Aging Charts using GAM models and the R Shiny package.

    R 1

  5. tick_pyramid_tool tick_pyramid_tool Public

    Web application for visualizing climbing pyramids (data obtained from MountainProject.com)

    Python 1 1

  6. ML_working_group ML_working_group Public

    Code examples from working group in Neural Network Workshop Series

    Jupyter Notebook