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gattaca classes#5

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cetienn01 wants to merge 5 commits intorschenck:masterfrom
cetienn01:gattaca_classes
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gattaca classes#5
cetienn01 wants to merge 5 commits intorschenck:masterfrom
cetienn01:gattaca_classes

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  • updated Gattaca.py script
  • updated "gattaca_classes.py" script

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The initial code in gattaca_classes.py had a flag -t that is not recognized by snpeff and was throwing an error
cmd = ["java","-jar", snpeff['snpeff'], "genes2bed", "-t", Options.genome, ' '.join(genes)]

I removed that flag from the script as it is not needed.
cmd = ["java","-jar", snpeff['snpeff'], "genes2bed", Options.genome, ' '.join(genes)]

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