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  • University of Cambridge
  • Cambridge, England
  • 13:11 (UTC +01:00)
  • LinkedIn in/rehanzuberi

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rzuberi/README.md

Rehan Zuberi

PhD researcher in Medical Sciences (AI in Oncology) at the University of Cambridge, working at the Cancer Research UK Cambridge Institute.

I design multimodal machine learning systems that integrate histopathology, genomics, and clinical data for early cancer progression prediction, with emphasis on reproducibility, safety, and deployment in research infrastructure.

rdaz2@cam.ac.uk · LinkedIn · Schedule a call


Current Projects

Developing and benchmarking multimodal models combining histopathology and copy number variation data to predict progression risk in Barrett’s oesophagus.

Compact benchmark for testing prompt injection, answer poisoning, protected-context leakage, and unsafe tool use in retrieval-augmented generation systems, with a minimal end-to-end RAG pipeline, lightweight defenses, and reproducible evaluation reports.

Compact benchmark for testing whether simple monitors can catch suspicious coding-agent behaviour on realistic toy software tasks, with structured action, diff, test, and timing logs plus clean evaluation and failure-case reporting.

Lightweight CLI for turning predictions, metrics, configuration, and optional logs into standardized evaluation reports with markdown, HTML, and machine-readable summaries across classification, ranking, and agent tasks.

Privacy-aware early public-health signal monitoring prototype using synthetic data, interpretable anomaly detection, and cautious research-first framing.

Building a SLURM-backed local LLM inference tool for CRUK CI that enables reproducible, logged, GPU-based model execution on institutional HPC infrastructure.

Designing and running repeated public-goods games where agents are LLMs executed as SLURM jobs via Ollama on HPC infrastructure. The framework enables controlled experiments on multi-agent coordination, contribution dynamics, communication effects, and model-level behavioural differences, with full job-level logging and experiment aggregation.

Minimal macOS SwiftUI application for real-time voice processing using AVAudioEngine. Implements live autotune intensity control, reverb control, device routing, and record mode with timestamped audio export in a lightweight local pipeline runnable via Swift Package Manager.

Chrome extension for blocking distracting websites with a local dashboard, built-in social and adult/NSFW groups, custom domain rules, and recurring weekly schedules.

Electron desktop app for spawning and viewing multiple live terminal windows in one place, intended as an early foundation for a more visual multi-session workflow.

Weekend flight tracker for Geneva and London airports with a lightweight TypeScript workflow for route-level monitoring.

Static GitHub Pages website for Life in the UK practice questions with a fast topic-first workflow and pre-computed LLM context generation for each question.

Terminal-first Spanish cloze practice over SSH with spaced repetition, local progress tracking, and sentence cards built from the Tatoeba English-Spanish corpus.


Archived Projects

Cell Segmentation-Classification-Tracking

Napari Extension

U-Net Development

Face Alignment Task with HOG features and CNN

Memorability Classification

Evoluationary Cart Pole

SpringBoot Database

SQL Hospital Database

Marupeke Game

Pinned Loading

  1. napari-exploration napari-exploration Public

    Creating a Napari plugin to perform tracking operations in live cell images

    Python 1

  2. cart_pole_FMGA cart_pole_FMGA Public

    Evaluating the behavioural changes of the OpenAI cart pole task solved with a Full Microbial Genetic Algorithm

    Jupyter Notebook

  3. cell-SCT cell-SCT Public

    Create a machine learning model that can Segment, Classify and Track (SCT) cells.

    Jupyter Notebook

  4. Face_Alignment_HOG_CNN Face_Alignment_HOG_CNN Public

    A Computer Vision research assignment to design a model to predict the coordinates of facial features (nose, eyes, mouth, etc.) from a dataset of images of faces.

    Jupyter Notebook

  5. u_net_exploration u_net_exploration Public

    Making a u_net to segment, classify and track cells

    Jupyter Notebook 1

  6. memorability_classification memorability_classification Public

    Binary classification task on features collected by a CNN on images that humans marked as memorable or not

    Jupyter Notebook