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1. dnafreak dnafreak Public

   Biology is stranger than you were taught.

   TypeScript

2. gsea-analysis gsea-analysis Public

   Reproducible Nextflow DSL2 pipeline for gene set enrichment analysis using DESeq2, fgsea, Docker, and publication-quality visualization.

   Nextflow

3. rare-disease-foundation-model-benchmark rare-disease-foundation-model-benchmark Public

   Benchmarking DNA and protein foundation models for rare disease variant interpretation.

4. rna-seq-pipeline rna-seq-pipeline Public

   A reproducible RNA-seq analysis pipeline built with Nextflow and Docker, supporting QC, alignment, quantification, differential expression, transcript discovery, and automated reporting.

   Nextflow

5. sars-cov-2-3clpro-ace2-screening sars-cov-2-3clpro-ace2-screening Public

   Published research on virtual screening, molecular docking, and simulation-based identification of SARS-CoV-2 inhibitors.

6. superinformation superinformation Public

   A multiscale information-theoretic framework for quantifying genomic sequence organization across Sequence Ontology features.

   Python