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Use Rarr::write_zarr_group to write zarr store/group - #490

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Use Rarr::write_zarr_group to write zarr store/group#490
Artur-man wants to merge 13 commits into
scverse:develfrom
Artur-man:write_group

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@Artur-man

@Artur-man Artur-man commented Jul 26, 2026

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Related to: Huber-group-EMBL/Rarr#208

Description

Replacing temporary zarr utilities create_zarr(_group) with new built-in write_zarr_group in Rarr 2.1.27. We can also keep this PR as it is until #455 is merged, might make the merge of this PR easier since write_zarr_group should always be set to zarr_version=2L without #455.

UPDATE: Since #455 is merged, format is now passed to zarr_version for Rarr::write_zarr_group.

Checklist

Before review

  • Update and regenerate man pages
  • Add/update tests
  • Add/update examples in vignettes
  • Pass CI checks

Before merge

  • Update NEWS
  • Bump devel version

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github-actions Bot commented Jul 27, 2026

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🐰 Bencher Report

ProjectanndataR
Branchwrite_group
Testbedubuntu-latest

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@rcannood

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Thanks! Could you set the minimum version of rarr in the description to 2.1.27?

@Artur-man

Artur-man commented Jul 28, 2026

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Everything looks good but since > 2.1.26 is not loaded we fail some CIs (Rarr devel is >= 2.1.29 now).

@Artur-man

Artur-man commented Aug 15, 2026

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Tests look ok, but write_zarr_nullable_string does not have any tests ?

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2 participants