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Release 0.1.0

Status: Open.

#243 In seqan/iGenVar;

· Irallia opened on Nov 4, 2022

Recheck TANDEM:DUPs

Status: Open.

#224 In seqan/iGenVar;

· Irallia opened on Jul 20, 2022

Dependency managment

Status: Open.

#206 In seqan/iGenVar;

· Irallia opened on Apr 26, 2022

[BENCHMARKS] Examine the calling results more closely.

Status: Open.

#205 In seqan/iGenVar;

· Irallia opened on Apr 25, 2022

iGenVar - [BENCHMARK] Create short & long read benchmarks

Epic

Status: Open.

#197 In seqan/iGenVar;

· Irallia opened on Mar 7, 2022

[FEATURE] Call/Confirm SVs with read depth information

Status: Open.

#179 In seqan/iGenVar;

· Irallia opened on Nov 15, 2021

How do we track constant parameters?

questionFurther information is requestedFurther information is requested

Status: Open.

#174 In seqan/iGenVar;

· joergi-w opened on Oct 25, 2021

[BUG] Count duplications in the reference

Status: Open.

#173 In seqan/iGenVar;

· Irallia opened on Oct 19, 2021

[FEATURE] Extend VCF output with CN (copynumber)

Status: Open.

#172 In seqan/iGenVar;

· Irallia opened on Oct 19, 2021

[FEATURE] Call Tandem Duplications from CIGAR string

Status: Open.

#166 In seqan/iGenVar;

· Irallia opened on Sep 27, 2021

Determine different variants from the haplotypes

enhancementNew feature or requestNew feature or request

Status: Open.

#155 In seqan/iGenVar;

· joergi-w opened on Sep 2, 2021

Re-assemble reads to the reference genome and determine haplotypes

enhancementNew feature or requestNew feature or request

Status: Open.

#154 In seqan/iGenVar;

· joergi-w opened on Sep 2, 2021