feat: upgrade to Python 3.10 and modernize codebase#259
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- Update minimum Python version from 3.8 to 3.10 - Modernize type hints using Python 3.10+ union syntax (| instead of Optional/List) - Update copyright year from 2023 to 2025 in all source files - Add Python version classifiers to pyproject.toml - Update .python-version to 3.10 - Update README.md to reflect Python 3.10 requirement All tests pass successfully with Python 3.10.9. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
The yaml import is required for yaml.safe_load() usage in the env_file processing code, but ruff's static analysis doesn't detect this usage. Adding noqa comment to prevent auto-removal.
…e import The parameter name 'yaml' was conflicting with the yaml module import, causing ruff error F811 (redefinition of unused variable). Renamed the parameter to 'yaml_files' to resolve the conflict.
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Summary
This PR upgrades seqerakit from Python 3.8 (EOL) to Python 3.10 and modernizes the codebase with Python 3.10+ features.
Changes Made
Python Version Updates
.python-versionfrom 3.12 to 3.10pyproject.tomlrequires-pythonfrom>=3.8,<4to>=3.10,<4README.mdPython requirement from>=3.8to>=3.10pyproject.toml(3.10, 3.11, 3.12)Code Modernization
seqerakit/cli.pyto use Python 3.10+ union syntaxOptional[List[str]]→list[str] | NoneOptional[str]→str | Nonefrom typing import Optional, ListimportsCopyright Updates
seqerakit/cli.pyseqerakit/utils.pyseqerakit/seqeraplatform.pyseqerakit/helper.pyseqerakit/overwrite.pyseqerakit/pipelines.pyseqerakit/computeenvs.pytests/unit/test_utils.pyTest plan
seqerakit --helpruns successfullyseqerakit --versiondisplays correctlyuv synccompletes without errorsMotivation
Python 3.8 reached end-of-life in October 2024. Upgrading to Python 3.10 ensures continued security updates and allows us to use modern Python features.
🤖 Generated with Claude Code