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build(deps): Update snakemake requirement from <=7.32.4 to <=8.27.1#305

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build(deps): Update snakemake requirement from <=7.32.4 to <=8.27.1#305
dependabot[bot] wants to merge 1 commit intomasterfrom
dependabot/pip/snakemake-lte-8.27.1

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@dependabot dependabot bot commented on behalf of github Feb 1, 2025

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v8.27.1

8.27.1 (2025-01-08)

Documentation

Changelog

Sourced from snakemake's changelog.

8.27.1 (2025-01-08)

Documentation

8.27.0 (2025-01-08)

Features

Documentation

  • add examples for rule item access helpers and subpath (a0cf5a1)

8.26.0 (2024-12-23)

Features

  • add helpers for deferred input/output etc. item access (#2927) (2cca9bc)

Bug Fixes

  • convert parameters so they can be serialized (#2925) (9e653fb)
  • correct formatting of R preamble (#2425) (5380cae)
  • fix modification checks for scripts and and notebooks containing wildcards or params in their paths (#2751) (773568d)
  • Improved handling of missing output files in group job postprocessing, accounting for temporary files. (#1765) (bac06ba)
  • mtime of script or notebook not triggering workflow without metadata (#3148) (e8a0b83)
  • Pass host attribute to GitlabFile instantiation within class methods (#3155) (9ef52de)
  • problem with spaces in path (#3236) (2d08c63)
  • require current yte release which contains an important bug fix for cases where numpy/pandas data is passed to templates (#3227) (c3339da)
  • rerun jobs if previously failed but rule was changed afterwards (thanks to @​laf070810 for bringing this up) (#3237) (1dc0084)
  • use relpath for configfiles added to the source archive (thanks to @​sposadac for the initial solution) (#3240) (bff3844)

8.25.5 (2024-11-29)

Bug Fixes

  • expand environment variables in --remote-job-local-storage-prefix within the remote job, not the main snakemake job (#3222) (59c86a4)

8.25.4 (2024-11-27)

... (truncated)

Commits
  • e8cb2c2 chore(main): release 8.27.1 (#3245)
  • 7995b11 Merge branch 'main' of github.com:snakemake/snakemake
  • 814ee4f docs: fix output name
  • 9dd2b22 chore(main): release 8.27.0 (#3244)
  • a0cf5a1 docs: add examples for rule item access helpers and subpath
  • bd0d36e feat: Add commentstring for vim plugin (#3104)
  • 2cf0fbc chore(main): release 8.26.0 (#3229)
  • bff3844 fix: use relpath for configfiles added to the source archive (thanks to @​spos...
  • bac06ba fix: Improved handling of missing output files in group job postprocessing, a...
  • 9ef52de fix: Pass host attribute to GitlabFile instantiation within class methods...
  • Additional commits viewable in compare view

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@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Feb 1, 2025
@dependabot dependabot bot force-pushed the dependabot/pip/snakemake-lte-8.27.1 branch from 98578c4 to c6d8bd8 Compare February 9, 2025 16:36
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codecov bot commented Feb 9, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 69.40%. Comparing base (9d8d492) to head (6c2d654).

Additional details and impacted files

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #305   +/-   ##
=======================================
  Coverage   69.40%   69.40%           
=======================================
  Files          37       37           
  Lines        3219     3219           
=======================================
  Hits         2234     2234           
  Misses        985      985           

Continue to review full report in Codecov by Sentry.

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dependabot bot commented on behalf of github Feb 10, 2025

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

Updates the requirements on [snakemake](https://github.com/snakemake/snakemake) to permit the latest version.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v2.4.8...v8.27.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot force-pushed the dependabot/pip/snakemake-lte-8.27.1 branch from c6d8bd8 to 6c2d654 Compare February 12, 2025 13:36
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dependabot bot commented on behalf of github Mar 1, 2025

Superseded by #307.

@dependabot dependabot bot closed this Mar 1, 2025
@dependabot dependabot bot deleted the dependabot/pip/snakemake-lte-8.27.1 branch March 1, 2025 19:50
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