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Added support for FlashLFQParameters#161

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Alexander-Sol:FlashParams
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Added support for FlashLFQParameters#161
Alexander-Sol wants to merge 2 commits into
smith-chem-wisc:masterfrom
Alexander-Sol:FlashParams

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@Alexander-Sol Alexander-Sol commented May 15, 2025

The current master of mzLib has FlashLFQ refactored such that parameters are stored in a new FlashLfqParameters class.

This PR enables FlashLFQ to work with the latest version of mzLib without breaking.

However, the integrations of the FlashLfqSettings in FlashLFQ and the FlashLfqParameters class in mzLib/FlashLFQ is clumsy. It's working, but the future directoin is to integrate this more seamlessly. FlashLFQ should be able to write/read FlashLfqParameters to/from .toml files, instead of having a custom .toml for FlashLfqSettings

Also, this PR references a local version of mzLib, so it won't run on appveyor/github actions. To use the code, you'll have to update the mzLib reference

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