chore: update cargo dependencies

[jan-kubica]

Summary

• refresh compatible Cargo transitive dependencies

Verification

• git diff --check
• cargo check
• cargo test

[gemini-code-assist]

Code Review

This pull request updates multiple dependencies in Cargo.lock to newer versions, including assert_cmd, assert_fs, autocfg, bitflags, clap, either, hashbrown, indexmap, libc, log, memchr, regex, and serde_json, while also removing the doc-comment crate. There are no review comments, and I have no feedback to provide.

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