v0.1.1

[RWKrause]

Package

• Updated DESCRIPTION
  • Raised the R minimum to 4.1.0, since the examples use the native pipe
  • Pinned the minimum versions of {manynet} and {netrics}
• Updated CONTRIBUTING to document the architecture and the house conventions
• Added README.Rmd and pkgdown/_pkgdown.yml for this package
• Improved the loading messages
• Updated the Github Actions workflows
  • Added the PR metadata checks for the version bump and the PR title and body
  • Release notes are now taken from the matching NEWS.md section
  • Updated the action versions in prchecks and pushrelease
• Improved console messaging to use the snet_*() wrappers from {manynet}
  • Informational output is now silent by default, and follows snet_verbosity
  • Errors name what is missing and what is available
  • Added thisRequires(), which names the install command for a suggested package

Tests

• Improved test_permutation() by dropping two unused computations
• Updated the tests documentation to describe test_configuration()
• Updated the examples to use the native pipe |>

Regression

• Added a test suite for the regression engine, in four files
  • test-qap_estimators.R compares each estimator's baseline against the
    equivalent lm(), glm(), MASS, pscl, lme4, or fixest fit
  • test-qap_shapes.R counts the dyads that reach the model for a directed,
    an undirected, a two-mode, a pooled, and a partly missing network
  • test-qap_reproducibility.R fixes the seed contract, sequential and parallel
  • test-qap_control.R covers the control list and the null-hypothesis choice
  • helper-infernet.R holds the seeded fixtures and expect_qap_shape()
• Fixed a two-mode network being read as a square one
  • An 18x14 incidence matrix produced 306 dyads rather than 252
  • RMPerm() now permutes the rows and the columns of a rectangular matrix
    independently, rather than erroring on the shorter side
  • dist() and sim() now read each mode separately, as ego() and
    alter() already did
• Fixed an undirected network contributing each dyad twice, shrinking the standard error
• Fixed family = "zip" failing during permutation
  • Several estimators returned backticked coefficient names, which double
    semi-partialling could not look up
  • Coefficient names are now cleaned on the one path every estimator takes
• Fixed the {fixest} path reporting two intercepts where none was absorbed
• Fixed crossed sender and receiver intercepts aborting the run
  • Residualising falls back to no random intercepts, with a warning, where the
    mixed fit is singular
• Fixed use_gpu = TRUE aborting where {torch} or CUDA is unavailable
• Improved control to reject a name it does not take, and offer the nearest
• Improved the permutation loop to hold back a fitter's convergence warnings
  • These printed once per draw; the count of failed draws is still reported
• Improved lower, larger, and abs to carry the same row names under both
  null hypotheses
• Improved HC3() by dropping a gc() call that ran once per permutation
• Improved the missing-predictor error to name the sender, receiver, and
  network indices that a formula can also use
• Fixed tertius() rejecting a quoted summary function
  • tertius(x, "mean"), the documented spelling, now works alongside
    tertius(x, mean)
• Added tests for the tertius() spellings and for the missing-attribute error
• Fixed R/model_regression.R, which a bad merge left unable to parse
  • Restored .default_control(), .is_list_of_graphs(), and the head of
    .prepare_list_of_graphs()
  • Removed vectorise_list(), and the copies of logit_moments() and
    logit_resid() that duplicate R/qap_gmm.R