v1.6.9

[jhollway]

Description

Package

• Improved stocnet version check, consolidating into {migraph} so that it runs once rather than three times
  • Also consults each package's GitHub repository, so a fix that is released but not yet published on CRAN is reported; where both sources agree, CRAN is recommended, since it needs no compiler or {remotes}
  • Results are cached for seven days in tools::R_user_dir("migraph", "cache"), so most sessions make no network request at all
  • Check is skipped in non-interactive sessions, fails silently when offline or when no repository is configured, and can be disabled with options(snet_check_version = FALSE)

Learning

• Improved empty run_tute() listing of tutorials to suggest manynet>autograph>netrics>migraph sequence

Checklist:

• Documentation
  • Longer functions are commented inline or broken down into helper functions to help debugging
• PR form
  • PR description above and the NEWS.md file are aligned

[Copilot]

Pull request overview

This PR bumps migraph to v1.6.9, consolidating the stocnet stack’s “new version available” check into {migraph} (with caching and GitHub fallback) and adjusting the empty run_tute() tutorial listing to reflect the intended package progression.

Changes:

• Add a single cached attach-time version check for {migraph}, {manynet}, {autograph}, and {netrics}, consulting CRAN and GitHub.
• Update run_tute() package order and preserve that order in the empty listing output.
• Bump package version and align release notes / CRAN comments for the new behavior.

Reviewed changes

Copilot reviewed 6 out of 6 changed files in this pull request and generated 4 comments.

Show a summary per file

File	Description
R/zzz.R	Adds consolidated, cached CRAN/GitHub version checking on attach.
R/tutorial_run.R	Reorders stocnet package sequence and preserves listing order.
NEWS.md	Documents v1.6.9 changes (version check + tutorial listing).
NAMESPACE	Formats import blocks (no functional change intended).
DESCRIPTION	Bumps version to 1.6.9 and updates roxygen2 config version.
cran-comments.md	Documents attach-time caching + internet behavior for CRAN submission.

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 61.17%. Comparing base (f5c6ff9) to head (cd91db3).
⚠️ Report is 17 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #321      +/-   ##
==========================================
- Coverage   61.22%   61.17%   -0.06%     
==========================================
  Files           9        9              
  Lines         717      716       -1     
==========================================
- Hits          439      438       -1     
  Misses        278      278              

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