v1.0.1

[jhollway]

Methods

• Fixed cluster_cosine() to cluster nodes and not census features (thanks @Kaladani)

[Copilot]

Pull request overview

This PR prepares the netrics R package for release v1.0.1 by fixing cluster_cosine() so that clustering is performed over nodes (rows) rather than over motif/census features (columns), and by adding a regression test to prevent this from recurring.

Changes:

• Fixed cluster_cosine() to compute cosine similarities on transposed motif input (t(motif)), aligning it with the other clustering methods’ node-profile orientation.
• Added a regression test ensuring cosine-based clustering returns node-length memberships and node-sized distance matrices on a census with many features.
• Bumped package version to 1.0.1 and documented the fix in NEWS.md.

Reviewed changes

Copilot reviewed 4 out of 4 changed files in this pull request and generated no comments.

File	Description
R/method_cluster.R	Fixes cluster_cosine() to cluster nodes by transposing the motif before cosine similarity.
tests/testthat/test-model_cluster.R	Adds a regression test that would fail if cosine clustering is done over features instead of nodes.
NEWS.md	Adds 1.0.1 entry describing the cluster_cosine() fix.
DESCRIPTION	Updates package version to 1.0.1.

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 88.67%. Comparing base (f9f5176) to head (3431769).
⚠️ Report is 5 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #30      +/-   ##
==========================================
+ Coverage   88.62%   88.67%   +0.05%     
==========================================
  Files          30       30              
  Lines        3533     3533              
==========================================
+ Hits         3131     3133       +2     
+ Misses        402      400       -2     

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